miRNA display CGI


Results 81 - 100 of 354 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8946 5' -62.1 NC_002512.2 + 217293 0.71 0.524548
Target:  5'- --gCGGACcgcgCGCCGGGaGAUGaUCGGCu -3'
miRNA:   3'- cugGCCUGca--GCGGCCC-CUGC-AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 224065 0.71 0.533596
Target:  5'- cGACCauuucGACGcCGCCGaacGGGGCGgCGGCg -3'
miRNA:   3'- -CUGGc----CUGCaGCGGC---CCCUGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 92722 0.71 0.533596
Target:  5'- --aCGGACGUC-CgGGGGGCGcgcUCGGUc -3'
miRNA:   3'- cugGCCUGCAGcGgCCCCUGC---AGCCG- -5'
8946 5' -62.1 NC_002512.2 + 103676 0.71 0.533596
Target:  5'- cGCCucGACGUCGCagaGGGcGGCGgacgCGGCg -3'
miRNA:   3'- cUGGc-CUGCAGCGg--CCC-CUGCa---GCCG- -5'
8946 5' -62.1 NC_002512.2 + 93054 0.71 0.533596
Target:  5'- gGAgCGaGACGaCGCCGcGGGGCGUCGuCg -3'
miRNA:   3'- -CUgGC-CUGCaGCGGC-CCCUGCAGCcG- -5'
8946 5' -62.1 NC_002512.2 + 62053 0.71 0.533596
Target:  5'- -cCCGGACGU-GCgCGGGGuCcUCGGCc -3'
miRNA:   3'- cuGGCCUGCAgCG-GCCCCuGcAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 145487 0.71 0.537231
Target:  5'- cGACCccgucccgcagaGGACGcUGCCGGGGcugcuccggcucugcGCGUCGGg -3'
miRNA:   3'- -CUGG------------CCUGCaGCGGCCCC---------------UGCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 101626 0.7 0.542699
Target:  5'- cGCCGGGacgcgaGUCGCCgcucgaGGGGAgCG-CGGCg -3'
miRNA:   3'- cUGGCCUg-----CAGCGG------CCCCU-GCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 87835 0.7 0.542699
Target:  5'- cGGCCGGGCGucgggcccUCGCgGcGGGuCGcCGGCc -3'
miRNA:   3'- -CUGGCCUGC--------AGCGgC-CCCuGCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 156309 0.7 0.542699
Target:  5'- cGGCCG--UGUCGCaCGGGGAgcuCGUCGaGCg -3'
miRNA:   3'- -CUGGCcuGCAGCG-GCCCCU---GCAGC-CG- -5'
8946 5' -62.1 NC_002512.2 + 94471 0.7 0.559209
Target:  5'- cGACCGG-CGgaggagauccaGCCGGGGAcgcaguCGUCGGg -3'
miRNA:   3'- -CUGGCCuGCag---------CGGCCCCU------GCAGCCg -5'
8946 5' -62.1 NC_002512.2 + 5094 0.7 0.559209
Target:  5'- cGCCGG-CGUCGgCGcGGGcgggagagacauCGUCGGCa -3'
miRNA:   3'- cUGGCCuGCAGCgGC-CCCu-----------GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 220844 0.7 0.560131
Target:  5'- cGACgGGcugugucgcgucuACGUCGuCCGcGGGGCcUCGGCg -3'
miRNA:   3'- -CUGgCC-------------UGCAGC-GGC-CCCUGcAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 224543 0.7 0.561053
Target:  5'- aGACCGauACgGUCGCgGGGGAU-UCGGCg -3'
miRNA:   3'- -CUGGCc-UG-CAGCGgCCCCUGcAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 22990 0.7 0.561053
Target:  5'- gGACgCGGGCGgCGCUGGuGAccuaccCGUCGGCg -3'
miRNA:   3'- -CUG-GCCUGCaGCGGCCcCU------GCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 95035 0.7 0.561053
Target:  5'- -cCCGaGACGUCGCgCGGGGagcaccagcgcGCGUUGaGCc -3'
miRNA:   3'- cuGGC-CUGCAGCG-GCCCC-----------UGCAGC-CG- -5'
8946 5' -62.1 NC_002512.2 + 218105 0.7 0.561053
Target:  5'- --gCGGGCGUCGCgccCGGGGuCGcUCGGg -3'
miRNA:   3'- cugGCCUGCAGCG---GCCCCuGC-AGCCg -5'
8946 5' -62.1 NC_002512.2 + 157063 0.7 0.561053
Target:  5'- --gCGGGCGUC-CCGGGGuccgggguCGcCGGCg -3'
miRNA:   3'- cugGCCUGCAGcGGCCCCu-------GCaGCCG- -5'
8946 5' -62.1 NC_002512.2 + 122838 0.7 0.568443
Target:  5'- aGGCCGcGACgGUCGCCGcccugcuGGaagaccaggacauGACGUCGGCc -3'
miRNA:   3'- -CUGGC-CUG-CAGCGGC-------CC-------------CUGCAGCCG- -5'
8946 5' -62.1 NC_002512.2 + 189580 0.7 0.569368
Target:  5'- cGACCGGGC--CGCCGGGuccucgggacGACGUucgugcgCGGCg -3'
miRNA:   3'- -CUGGCCUGcaGCGGCCC----------CUGCA-------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.