miRNA display CGI


Results 21 - 40 of 168 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 3' -60 NC_002512.2 + 225504 0.66 0.865152
Target:  5'- gGGCCG-CCgCGGGGgucccgggcuucgcGGACGGGACg- -3'
miRNA:   3'- -CUGGCuGGaGCCUCa-------------CCUGCCCUGgg -5'
8947 3' -60 NC_002512.2 + 222993 0.66 0.863039
Target:  5'- -cUCGACCUgcCGGGGagcggcacggcccagGGACGGGucgucGCCCa -3'
miRNA:   3'- cuGGCUGGA--GCCUCa--------------CCUGCCC-----UGGG- -5'
8947 3' -60 NC_002512.2 + 5183 0.66 0.862331
Target:  5'- cGGCCGGCCccagCaGGGcGGGCaGGACCg -3'
miRNA:   3'- -CUGGCUGGa---GcCUCaCCUGcCCUGGg -5'
8947 3' -60 NC_002512.2 + 103167 0.66 0.862331
Target:  5'- cGCCGcGCC-CGGcGaGGACGaGGACCUg -3'
miRNA:   3'- cUGGC-UGGaGCCuCaCCUGC-CCUGGG- -5'
8947 3' -60 NC_002512.2 + 68924 0.66 0.862331
Target:  5'- cGCCGcgGCCUCGGGG-GGAuccccccuCGuGACCCc -3'
miRNA:   3'- cUGGC--UGGAGCCUCaCCU--------GCcCUGGG- -5'
8947 3' -60 NC_002512.2 + 185646 0.66 0.862331
Target:  5'- -uCCGACCUCcuGGG-GGACgucgcgGGGAUCCu -3'
miRNA:   3'- cuGGCUGGAGc-CUCaCCUG------CCCUGGG- -5'
8947 3' -60 NC_002512.2 + 96526 0.66 0.862331
Target:  5'- aGCCGcGCCggCGGuGUGaGcCGGGGCCg -3'
miRNA:   3'- cUGGC-UGGa-GCCuCAC-CuGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 94049 0.66 0.862331
Target:  5'- uGACggCGACCg-GGAagGGcGCGGGACCCu -3'
miRNA:   3'- -CUG--GCUGGagCCUcaCC-UGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 150560 0.66 0.862331
Target:  5'- --gCGACCUgGGAGgggaggaGGAgCGGGGCgCg -3'
miRNA:   3'- cugGCUGGAgCCUCa------CCU-GCCCUGgG- -5'
8947 3' -60 NC_002512.2 + 226390 0.66 0.862331
Target:  5'- gGGCCGACgaCGGc---GcCGGGACCCg -3'
miRNA:   3'- -CUGGCUGgaGCCucacCuGCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 8296 0.66 0.858046
Target:  5'- cACCGACCccccuccgggucgaCGGAGcagGGcCGGGAgCCg -3'
miRNA:   3'- cUGGCUGGa-------------GCCUCa--CCuGCCCUgGG- -5'
8947 3' -60 NC_002512.2 + 227962 0.66 0.855153
Target:  5'- gGACCGAaagCGGA-UGGACGGGAg-- -3'
miRNA:   3'- -CUGGCUggaGCCUcACCUGCCCUggg -5'
8947 3' -60 NC_002512.2 + 112897 0.66 0.855153
Target:  5'- cGugCGGCCgUCGGcccgcccGGACGGGgcgucggcgGCCCg -3'
miRNA:   3'- -CugGCUGG-AGCCuca----CCUGCCC---------UGGG- -5'
8947 3' -60 NC_002512.2 + 138113 0.66 0.855153
Target:  5'- cGCUGGcCCUgGGGGUGaaGGCGGaGAUCCc -3'
miRNA:   3'- cUGGCU-GGAgCCUCAC--CUGCC-CUGGG- -5'
8947 3' -60 NC_002512.2 + 223248 0.66 0.854426
Target:  5'- -uUCGAcuCCUCGGGcGUccgcgucgucgggGGGCGGGACgCCg -3'
miRNA:   3'- cuGGCU--GGAGCCU-CA-------------CCUGCCCUG-GG- -5'
8947 3' -60 NC_002512.2 + 27847 0.66 0.8478
Target:  5'- cGACaCGACCgcgagcCGGAccGGcGgGGGACCCg -3'
miRNA:   3'- -CUG-GCUGGa-----GCCUcaCC-UgCCCUGGG- -5'
8947 3' -60 NC_002512.2 + 186528 0.66 0.8478
Target:  5'- -gUCGACCUCuGcGUGcACGGGGCCg -3'
miRNA:   3'- cuGGCUGGAGcCuCACcUGCCCUGGg -5'
8947 3' -60 NC_002512.2 + 100249 0.66 0.8478
Target:  5'- cGACCGcguCCUCGGAGagcgggagGaGACGGaGCUCg -3'
miRNA:   3'- -CUGGCu--GGAGCCUCa-------C-CUGCCcUGGG- -5'
8947 3' -60 NC_002512.2 + 130589 0.66 0.8478
Target:  5'- aGGCCGcgGCCUCGGAGgcggagGaGACGaagaGCCCg -3'
miRNA:   3'- -CUGGC--UGGAGCCUCa-----C-CUGCcc--UGGG- -5'
8947 3' -60 NC_002512.2 + 122619 0.66 0.8478
Target:  5'- --gCGGCCUCGGuccgGGUGaACGcGGACCg -3'
miRNA:   3'- cugGCUGGAGCC----UCACcUGC-CCUGGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.