Results 21 - 40 of 168 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8947 | 3' | -60 | NC_002512.2 | + | 225504 | 0.66 | 0.865152 |
Target: 5'- gGGCCG-CCgCGGGGgucccgggcuucgcGGACGGGACg- -3' miRNA: 3'- -CUGGCuGGaGCCUCa-------------CCUGCCCUGgg -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 222993 | 0.66 | 0.863039 |
Target: 5'- -cUCGACCUgcCGGGGagcggcacggcccagGGACGGGucgucGCCCa -3' miRNA: 3'- cuGGCUGGA--GCCUCa--------------CCUGCCC-----UGGG- -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 5183 | 0.66 | 0.862331 |
Target: 5'- cGGCCGGCCccagCaGGGcGGGCaGGACCg -3' miRNA: 3'- -CUGGCUGGa---GcCUCaCCUGcCCUGGg -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 103167 | 0.66 | 0.862331 |
Target: 5'- cGCCGcGCC-CGGcGaGGACGaGGACCUg -3' miRNA: 3'- cUGGC-UGGaGCCuCaCCUGC-CCUGGG- -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 68924 | 0.66 | 0.862331 |
Target: 5'- cGCCGcgGCCUCGGGG-GGAuccccccuCGuGACCCc -3' miRNA: 3'- cUGGC--UGGAGCCUCaCCU--------GCcCUGGG- -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 185646 | 0.66 | 0.862331 |
Target: 5'- -uCCGACCUCcuGGG-GGACgucgcgGGGAUCCu -3' miRNA: 3'- cuGGCUGGAGc-CUCaCCUG------CCCUGGG- -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 96526 | 0.66 | 0.862331 |
Target: 5'- aGCCGcGCCggCGGuGUGaGcCGGGGCCg -3' miRNA: 3'- cUGGC-UGGa-GCCuCAC-CuGCCCUGGg -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 94049 | 0.66 | 0.862331 |
Target: 5'- uGACggCGACCg-GGAagGGcGCGGGACCCu -3' miRNA: 3'- -CUG--GCUGGagCCUcaCC-UGCCCUGGG- -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 150560 | 0.66 | 0.862331 |
Target: 5'- --gCGACCUgGGAGgggaggaGGAgCGGGGCgCg -3' miRNA: 3'- cugGCUGGAgCCUCa------CCU-GCCCUGgG- -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 226390 | 0.66 | 0.862331 |
Target: 5'- gGGCCGACgaCGGc---GcCGGGACCCg -3' miRNA: 3'- -CUGGCUGgaGCCucacCuGCCCUGGG- -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 8296 | 0.66 | 0.858046 |
Target: 5'- cACCGACCccccuccgggucgaCGGAGcagGGcCGGGAgCCg -3' miRNA: 3'- cUGGCUGGa-------------GCCUCa--CCuGCCCUgGG- -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 227962 | 0.66 | 0.855153 |
Target: 5'- gGACCGAaagCGGA-UGGACGGGAg-- -3' miRNA: 3'- -CUGGCUggaGCCUcACCUGCCCUggg -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 112897 | 0.66 | 0.855153 |
Target: 5'- cGugCGGCCgUCGGcccgcccGGACGGGgcgucggcgGCCCg -3' miRNA: 3'- -CugGCUGG-AGCCuca----CCUGCCC---------UGGG- -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 138113 | 0.66 | 0.855153 |
Target: 5'- cGCUGGcCCUgGGGGUGaaGGCGGaGAUCCc -3' miRNA: 3'- cUGGCU-GGAgCCUCAC--CUGCC-CUGGG- -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 223248 | 0.66 | 0.854426 |
Target: 5'- -uUCGAcuCCUCGGGcGUccgcgucgucgggGGGCGGGACgCCg -3' miRNA: 3'- cuGGCU--GGAGCCU-CA-------------CCUGCCCUG-GG- -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 27847 | 0.66 | 0.8478 |
Target: 5'- cGACaCGACCgcgagcCGGAccGGcGgGGGACCCg -3' miRNA: 3'- -CUG-GCUGGa-----GCCUcaCC-UgCCCUGGG- -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 186528 | 0.66 | 0.8478 |
Target: 5'- -gUCGACCUCuGcGUGcACGGGGCCg -3' miRNA: 3'- cuGGCUGGAGcCuCACcUGCCCUGGg -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 100249 | 0.66 | 0.8478 |
Target: 5'- cGACCGcguCCUCGGAGagcgggagGaGACGGaGCUCg -3' miRNA: 3'- -CUGGCu--GGAGCCUCa-------C-CUGCCcUGGG- -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 130589 | 0.66 | 0.8478 |
Target: 5'- aGGCCGcgGCCUCGGAGgcggagGaGACGaagaGCCCg -3' miRNA: 3'- -CUGGC--UGGAGCCUCa-----C-CUGCcc--UGGG- -5' |
|||||||
8947 | 3' | -60 | NC_002512.2 | + | 122619 | 0.66 | 0.8478 |
Target: 5'- --gCGGCCUCGGuccgGGUGaACGcGGACCg -3' miRNA: 3'- cugGCUGGAGCC----UCACcUGC-CCUGGg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home