Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8947 | 5' | -56.2 | NC_002512.2 | + | 74402 | 0.67 | 0.925711 |
Target: 5'- uGGGGGU-CCGGACGGUgccGAcgaacucgcGGUCGAc -3' miRNA: 3'- -UCUCCAgGGCUUGCCGaa-CU---------CCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 87260 | 0.7 | 0.832036 |
Target: 5'- gAGGGGUCuCCGGggagcgaacacGCGGUcgUGGGGUgGAc -3' miRNA: 3'- -UCUCCAG-GGCU-----------UGCCGa-ACUCCAgCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 25908 | 0.69 | 0.855421 |
Target: 5'- --cGGUCCgGAucCGGUccaUGAGGUCGAu -3' miRNA: 3'- ucuCCAGGgCUu-GCCGa--ACUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 4444 | 0.68 | 0.890554 |
Target: 5'- cGGGGUgCCGGGCGcg--GGGGUCGGc -3' miRNA: 3'- uCUCCAgGGCUUGCcgaaCUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 108389 | 0.68 | 0.890554 |
Target: 5'- cGGGGGgcgagCCCGGugGGUgggGGGGagGAc -3' miRNA: 3'- -UCUCCa----GGGCUugCCGaa-CUCCagCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 5518 | 0.68 | 0.890554 |
Target: 5'- cGAGGUCCCGGACc----GAGGUCu- -3' miRNA: 3'- uCUCCAGGGCUUGccgaaCUCCAGcu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 80671 | 0.68 | 0.890554 |
Target: 5'- --cGGUCCCGcGGCGGCggcgacgGGGG-CGAg -3' miRNA: 3'- ucuCCAGGGC-UUGCCGaa-----CUCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 152802 | 0.68 | 0.890554 |
Target: 5'- cGGAGGUCCgCGGcgACGGCggGcGG-CGAg -3' miRNA: 3'- -UCUCCAGG-GCU--UGCCGaaCuCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 121936 | 0.67 | 0.920404 |
Target: 5'- cGGcGGUCCCGGacccGCGGCgaUGAuguucgcucacGGUCGGg -3' miRNA: 3'- -UCuCCAGGGCU----UGCCGa-ACU-----------CCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 130076 | 0.7 | 0.82717 |
Target: 5'- uGGAcGGUCCCGAAacUGGC-UGAgcguuuuguguccgcGGUCGAg -3' miRNA: 3'- -UCU-CCAGGGCUU--GCCGaACU---------------CCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 39865 | 0.7 | 0.823893 |
Target: 5'- cAGAGGaucaugucggCCuCGAccGCGGCcaacUUGAGGUCGAc -3' miRNA: 3'- -UCUCCa---------GG-GCU--UGCCG----AACUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 32081 | 0.7 | 0.798513 |
Target: 5'- gGGGGGUCgCCGAugGCGGCccgggUGuccucgcGGUCGAg -3' miRNA: 3'- -UCUCCAG-GGCU--UGCCGa----ACu------CCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 105216 | 0.75 | 0.5489 |
Target: 5'- cGAGGUCCCGucUGGCggUGAGGgugaCGAu -3' miRNA: 3'- uCUCCAGGGCuuGCCGa-ACUCCa---GCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 16882 | 0.74 | 0.627379 |
Target: 5'- gAGAGGgccccgggCCCGAcggccGCGGCgacgaUGAGGUCGc -3' miRNA: 3'- -UCUCCa-------GGGCU-----UGCCGa----ACUCCAGCu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 80760 | 0.73 | 0.676741 |
Target: 5'- -cGGGUCCCGGggguccucGCGGCUcGAGGagGAg -3' miRNA: 3'- ucUCCAGGGCU--------UGCCGAaCUCCagCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 8036 | 0.72 | 0.715659 |
Target: 5'- gAGAGGUCCCGGucccgaGGCgcccccgcGGGUCGGa -3' miRNA: 3'- -UCUCCAGGGCUug----CCGaac-----UCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 56360 | 0.71 | 0.766407 |
Target: 5'- cAGAcGGcCCCGAcggacggaucggcggACGGCggggcGAGGUCGAg -3' miRNA: 3'- -UCU-CCaGGGCU---------------UGCCGaa---CUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 123394 | 0.71 | 0.780877 |
Target: 5'- cGGGGaguucuUCUCGGACGGCgaGGcGGUCGAg -3' miRNA: 3'- uCUCC------AGGGCUUGCCGaaCU-CCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 31645 | 0.7 | 0.789762 |
Target: 5'- uGGAGGccgUCCCGGACGGCgc-GGGcgCGGc -3' miRNA: 3'- -UCUCC---AGGGCUUGCCGaacUCCa-GCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 32693 | 0.7 | 0.798513 |
Target: 5'- uAGAcGGcCCCGAGCGGgUccaUGAGGaCGAa -3' miRNA: 3'- -UCU-CCaGGGCUUGCCgA---ACUCCaGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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