miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8947 5' -56.2 NC_002512.2 + 204888 0.67 0.935654
Target:  5'- cGAGcUCUCGGACGGCgagcgGuccuGGUCGGg -3'
miRNA:   3'- uCUCcAGGGCUUGCCGaa---Cu---CCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 204805 0.67 0.935654
Target:  5'- gGGAGGUCCgCGucccgggggcgcGGCGGCUccguccggGAGGaCGAc -3'
miRNA:   3'- -UCUCCAGG-GC------------UUGCCGAa-------CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 108449 0.67 0.930794
Target:  5'- gGGGGGUcccucCCCGGGCGGCgccGGGUUc- -3'
miRNA:   3'- -UCUCCA-----GGGCUUGCCGaacUCCAGcu -5'
8947 5' -56.2 NC_002512.2 + 59488 0.67 0.925711
Target:  5'- -cGGGUCUCGAGCGGCcUGGaugcuGGaCGAa -3'
miRNA:   3'- ucUCCAGGGCUUGCCGaACU-----CCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 152749 0.67 0.925711
Target:  5'- cGGaAGGUCCCccGACGGC--GAGGUCu- -3'
miRNA:   3'- -UC-UCCAGGGc-UUGCCGaaCUCCAGcu -5'
8947 5' -56.2 NC_002512.2 + 89342 0.67 0.925711
Target:  5'- uAGAGGaCCaGAACGGCgucGAGG-CGGc -3'
miRNA:   3'- -UCUCCaGGgCUUGCCGaa-CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 74402 0.67 0.925711
Target:  5'- uGGGGGU-CCGGACGGUgccGAcgaacucgcGGUCGAc -3'
miRNA:   3'- -UCUCCAgGGCUUGCCGaa-CU---------CCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 121936 0.67 0.920404
Target:  5'- cGGcGGUCCCGGacccGCGGCgaUGAuguucgcucacGGUCGGg -3'
miRNA:   3'- -UCuCCAGGGCU----UGCCGa-ACU-----------CCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 113717 0.67 0.914875
Target:  5'- -uGGGUCCCGAcgcggGCGGCgaucUGcGGGcCGAg -3'
miRNA:   3'- ucUCCAGGGCU-----UGCCGa---AC-UCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 114266 0.67 0.912601
Target:  5'- cGAGGcgagaaUCCuCGAACGGCgcgaucucucgagUGAGGUUGu -3'
miRNA:   3'- uCUCC------AGG-GCUUGCCGa------------ACUCCAGCu -5'
8947 5' -56.2 NC_002512.2 + 153273 0.68 0.909123
Target:  5'- -cGGGUCCUGGuCGGCUggcuccgcuGGGUCGGu -3'
miRNA:   3'- ucUCCAGGGCUuGCCGAac-------UCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 93757 0.68 0.89696
Target:  5'- cGGAGGgCUCGGAgGGagggaggGAGGUCGGg -3'
miRNA:   3'- -UCUCCaGGGCUUgCCgaa----CUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 152802 0.68 0.890554
Target:  5'- cGGAGGUCCgCGGcgACGGCggGcGG-CGAg -3'
miRNA:   3'- -UCUCCAGG-GCU--UGCCGaaCuCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 4444 0.68 0.890554
Target:  5'- cGGGGUgCCGGGCGcg--GGGGUCGGc -3'
miRNA:   3'- uCUCCAgGGCUUGCcgaaCUCCAGCU- -5'
8947 5' -56.2 NC_002512.2 + 108389 0.68 0.890554
Target:  5'- cGGGGGgcgagCCCGGugGGUgggGGGGagGAc -3'
miRNA:   3'- -UCUCCa----GGGCUugCCGaa-CUCCagCU- -5'
8947 5' -56.2 NC_002512.2 + 5518 0.68 0.890554
Target:  5'- cGAGGUCCCGGACc----GAGGUCu- -3'
miRNA:   3'- uCUCCAGGGCUUGccgaaCUCCAGcu -5'
8947 5' -56.2 NC_002512.2 + 80671 0.68 0.890554
Target:  5'- --cGGUCCCGcGGCGGCggcgacgGGGG-CGAg -3'
miRNA:   3'- ucuCCAGGGC-UUGCCGaa-----CUCCaGCU- -5'
8947 5' -56.2 NC_002512.2 + 163001 0.69 0.877109
Target:  5'- cGGAuGGcguUCCuCGAGCGGCccGAGGUCa- -3'
miRNA:   3'- -UCU-CC---AGG-GCUUGCCGaaCUCCAGcu -5'
8947 5' -56.2 NC_002512.2 + 221602 0.69 0.862847
Target:  5'- gGGGGGUCggUGGACGGCgagGAGGgagCGGg -3'
miRNA:   3'- -UCUCCAGg-GCUUGCCGaa-CUCCa--GCU- -5'
8947 5' -56.2 NC_002512.2 + 25908 0.69 0.855421
Target:  5'- --cGGUCCgGAucCGGUccaUGAGGUCGAu -3'
miRNA:   3'- ucuCCAGGgCUu-GCCGa--ACUCCAGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.