Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8947 | 5' | -56.2 | NC_002512.2 | + | 204888 | 0.67 | 0.935654 |
Target: 5'- cGAGcUCUCGGACGGCgagcgGuccuGGUCGGg -3' miRNA: 3'- uCUCcAGGGCUUGCCGaa---Cu---CCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 204805 | 0.67 | 0.935654 |
Target: 5'- gGGAGGUCCgCGucccgggggcgcGGCGGCUccguccggGAGGaCGAc -3' miRNA: 3'- -UCUCCAGG-GC------------UUGCCGAa-------CUCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 108449 | 0.67 | 0.930794 |
Target: 5'- gGGGGGUcccucCCCGGGCGGCgccGGGUUc- -3' miRNA: 3'- -UCUCCA-----GGGCUUGCCGaacUCCAGcu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 59488 | 0.67 | 0.925711 |
Target: 5'- -cGGGUCUCGAGCGGCcUGGaugcuGGaCGAa -3' miRNA: 3'- ucUCCAGGGCUUGCCGaACU-----CCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 152749 | 0.67 | 0.925711 |
Target: 5'- cGGaAGGUCCCccGACGGC--GAGGUCu- -3' miRNA: 3'- -UC-UCCAGGGc-UUGCCGaaCUCCAGcu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 89342 | 0.67 | 0.925711 |
Target: 5'- uAGAGGaCCaGAACGGCgucGAGG-CGGc -3' miRNA: 3'- -UCUCCaGGgCUUGCCGaa-CUCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 74402 | 0.67 | 0.925711 |
Target: 5'- uGGGGGU-CCGGACGGUgccGAcgaacucgcGGUCGAc -3' miRNA: 3'- -UCUCCAgGGCUUGCCGaa-CU---------CCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 121936 | 0.67 | 0.920404 |
Target: 5'- cGGcGGUCCCGGacccGCGGCgaUGAuguucgcucacGGUCGGg -3' miRNA: 3'- -UCuCCAGGGCU----UGCCGa-ACU-----------CCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 113717 | 0.67 | 0.914875 |
Target: 5'- -uGGGUCCCGAcgcggGCGGCgaucUGcGGGcCGAg -3' miRNA: 3'- ucUCCAGGGCU-----UGCCGa---AC-UCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 114266 | 0.67 | 0.912601 |
Target: 5'- cGAGGcgagaaUCCuCGAACGGCgcgaucucucgagUGAGGUUGu -3' miRNA: 3'- uCUCC------AGG-GCUUGCCGa------------ACUCCAGCu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 153273 | 0.68 | 0.909123 |
Target: 5'- -cGGGUCCUGGuCGGCUggcuccgcuGGGUCGGu -3' miRNA: 3'- ucUCCAGGGCUuGCCGAac-------UCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 93757 | 0.68 | 0.89696 |
Target: 5'- cGGAGGgCUCGGAgGGagggaggGAGGUCGGg -3' miRNA: 3'- -UCUCCaGGGCUUgCCgaa----CUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 152802 | 0.68 | 0.890554 |
Target: 5'- cGGAGGUCCgCGGcgACGGCggGcGG-CGAg -3' miRNA: 3'- -UCUCCAGG-GCU--UGCCGaaCuCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 4444 | 0.68 | 0.890554 |
Target: 5'- cGGGGUgCCGGGCGcg--GGGGUCGGc -3' miRNA: 3'- uCUCCAgGGCUUGCcgaaCUCCAGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 108389 | 0.68 | 0.890554 |
Target: 5'- cGGGGGgcgagCCCGGugGGUgggGGGGagGAc -3' miRNA: 3'- -UCUCCa----GGGCUugCCGaa-CUCCagCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 5518 | 0.68 | 0.890554 |
Target: 5'- cGAGGUCCCGGACc----GAGGUCu- -3' miRNA: 3'- uCUCCAGGGCUUGccgaaCUCCAGcu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 80671 | 0.68 | 0.890554 |
Target: 5'- --cGGUCCCGcGGCGGCggcgacgGGGG-CGAg -3' miRNA: 3'- ucuCCAGGGC-UUGCCGaa-----CUCCaGCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 163001 | 0.69 | 0.877109 |
Target: 5'- cGGAuGGcguUCCuCGAGCGGCccGAGGUCa- -3' miRNA: 3'- -UCU-CC---AGG-GCUUGCCGaaCUCCAGcu -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 221602 | 0.69 | 0.862847 |
Target: 5'- gGGGGGUCggUGGACGGCgagGAGGgagCGGg -3' miRNA: 3'- -UCUCCAGg-GCUUGCCGaa-CUCCa--GCU- -5' |
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8947 | 5' | -56.2 | NC_002512.2 | + | 25908 | 0.69 | 0.855421 |
Target: 5'- --cGGUCCgGAucCGGUccaUGAGGUCGAu -3' miRNA: 3'- ucuCCAGGgCUu-GCCGa--ACUCCAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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