miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8948 3' -55.6 NC_002512.2 + 139819 0.73 0.684943
Target:  5'- gGUCGGGUGUCCaaggaCGugGGCgagUUCUGUCGc -3'
miRNA:   3'- -CAGCUCACGGG-----GUugCCG---AAGACAGU- -5'
8948 3' -55.6 NC_002512.2 + 48558 0.7 0.807475
Target:  5'- -cUGA-UGCCCCGGCGGCUggagCUGUa- -3'
miRNA:   3'- caGCUcACGGGGUUGCCGAa---GACAgu -5'
8948 3' -55.6 NC_002512.2 + 99233 0.69 0.837619
Target:  5'- gGUCGugcgcaucuGGUGCCCCGGCGccgucaccgagucCUUCUGUCGc -3'
miRNA:   3'- -CAGC---------UCACGGGGUUGCc------------GAAGACAGU- -5'
8948 3' -55.6 NC_002512.2 + 34054 0.69 0.840831
Target:  5'- cUCGAggcGUGCCCCAcgACGGCggC-GUCGa -3'
miRNA:   3'- cAGCU---CACGGGGU--UGCCGaaGaCAGU- -5'
8948 3' -55.6 NC_002512.2 + 37324 0.68 0.910649
Target:  5'- -cCGAG-GCCCCGgccACGGaCgcgCUGUCGg -3'
miRNA:   3'- caGCUCaCGGGGU---UGCC-Gaa-GACAGU- -5'
8948 3' -55.6 NC_002512.2 + 97801 0.66 0.946293
Target:  5'- gGUCGAGcGCUCCGGCuccgucgacgGGCUcCUGUUg -3'
miRNA:   3'- -CAGCUCaCGGGGUUG----------CCGAaGACAGu -5'
8948 3' -55.6 NC_002512.2 + 19705 0.66 0.950471
Target:  5'- gGUCGggacgcAGUGCUCCuggaugAACGGCccgCUGUCGa -3'
miRNA:   3'- -CAGC------UCACGGGG------UUGCCGaa-GACAGU- -5'
8948 3' -55.6 NC_002512.2 + 174574 0.66 0.950471
Target:  5'- aGUCGAGUGCCggGACGaa-UCUGUCu -3'
miRNA:   3'- -CAGCUCACGGggUUGCcgaAGACAGu -5'
8948 3' -55.6 NC_002512.2 + 82032 0.66 0.954427
Target:  5'- gGUCGGGgucGCgCCGGCGGCg---GUCGc -3'
miRNA:   3'- -CAGCUCa--CGgGGUUGCCGaagaCAGU- -5'
8948 3' -55.6 NC_002512.2 + 111676 0.66 0.954427
Target:  5'- -aCGAGgGCCCCGucgcaccagACGGCcUCgggGUCGc -3'
miRNA:   3'- caGCUCaCGGGGU---------UGCCGaAGa--CAGU- -5'
8948 3' -55.6 NC_002512.2 + 117124 0.66 0.946293
Target:  5'- -aCGGG-GCCCCGucgGCGGCgUUCgaGUCGc -3'
miRNA:   3'- caGCUCaCGGGGU---UGCCG-AAGa-CAGU- -5'
8948 3' -55.6 NC_002512.2 + 124262 0.67 0.937257
Target:  5'- -aCG-GUGCaCCCGACGGCggC-GUCGg -3'
miRNA:   3'- caGCuCACG-GGGUUGCCGaaGaCAGU- -5'
8948 3' -55.6 NC_002512.2 + 167563 0.68 0.898404
Target:  5'- --gGGGUGCCCgu-CGGCUUCUucccgGUCAu -3'
miRNA:   3'- cagCUCACGGGguuGCCGAAGA-----CAGU- -5'
8948 3' -55.6 NC_002512.2 + 187281 0.69 0.85644
Target:  5'- cUCGaAGUGCCCCcg-GGCUUCggGUCc -3'
miRNA:   3'- cAGC-UCACGGGGuugCCGAAGa-CAGu -5'
8948 3' -55.6 NC_002512.2 + 220997 1.08 0.005442
Target:  5'- gGUCGAGUGCCCCAACGGCUUCUGUCAc -3'
miRNA:   3'- -CAGCUCACGGGGUUGCCGAAGACAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.