Results 81 - 100 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8949 | 3' | -64.4 | NC_002512.2 | + | 46989 | 0.67 | 0.59639 |
Target: 5'- cGCGCCcGCCGaga-GGGGCCGcuucuugcugGCGGCg -3' miRNA: 3'- -UGCGGaUGGCgccgCCCCGGC----------UGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 126339 | 0.67 | 0.59639 |
Target: 5'- cCGCUUuCgGCuGGUGGagacGGCCGGCGGCa -3' miRNA: 3'- uGCGGAuGgCG-CCGCC----CCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 71020 | 0.67 | 0.59639 |
Target: 5'- -gGCC-GCCGcCGGCc-GGUCGACGACg -3' miRNA: 3'- ugCGGaUGGC-GCCGccCCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 135748 | 0.67 | 0.577743 |
Target: 5'- cUGCCUccGCCGCGucauccGCGuccuGGCCGACGAg -3' miRNA: 3'- uGCGGA--UGGCGC------CGCc---CCGGCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 54248 | 0.67 | 0.587053 |
Target: 5'- cACGUCcGCaGCGGCaGGGC-GGCGGCg -3' miRNA: 3'- -UGCGGaUGgCGCCGcCCCGgCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 23329 | 0.67 | 0.587053 |
Target: 5'- gGCGCCccggGCCGcCGGCGGuGuaCGaguGCGGCg -3' miRNA: 3'- -UGCGGa---UGGC-GCCGCC-CcgGC---UGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 5497 | 0.67 | 0.60575 |
Target: 5'- cGCGCgU-CCGCGcCGGGGUCG-CGAg -3' miRNA: 3'- -UGCGgAuGGCGCcGCCCCGGCuGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 7453 | 0.67 | 0.60575 |
Target: 5'- -gGCCcgggggaaGCCGCGGCGcGGCUGcCGGCc -3' miRNA: 3'- ugCGGa-------UGGCGCCGCcCCGGCuGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 21911 | 0.67 | 0.568465 |
Target: 5'- cACGUCUcgucGCCGCuaCGGaGGgCGACGACg -3' miRNA: 3'- -UGCGGA----UGGCGccGCC-CCgGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 123659 | 0.67 | 0.615126 |
Target: 5'- aACGCC-GCgGCGGCcGGGCuCGGgGAa -3' miRNA: 3'- -UGCGGaUGgCGCCGcCCCG-GCUgCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 9487 | 0.67 | 0.615126 |
Target: 5'- -gGCCcGCgaGCGGCGGGuagaCGACGGCc -3' miRNA: 3'- ugCGGaUGg-CGCCGCCCcg--GCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 128020 | 0.67 | 0.614188 |
Target: 5'- cGCGgCUGCUGCGGCcGGGUCGcucgcugccucugGCGGa -3' miRNA: 3'- -UGCgGAUGGCGCCGcCCCGGC-------------UGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 45257 | 0.67 | 0.568465 |
Target: 5'- uCGCCgucgGCCGcCGGCGGGGCgcuCGcGCu -3' miRNA: 3'- uGCGGa---UGGC-GCCGCCCCGgcuGC-UG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 95252 | 0.67 | 0.614188 |
Target: 5'- gGCGuCCggaggGCCGCgcggcuccugaacGGCGGGGUCGGguucccguCGGCg -3' miRNA: 3'- -UGC-GGa----UGGCG-------------CCGCCCCGGCU--------GCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 10569 | 0.67 | 0.568465 |
Target: 5'- cACGCCgacgcucuccccgugGCCGCGGaCGacgaagcGGGCC-ACGGCg -3' miRNA: 3'- -UGCGGa--------------UGGCGCC-GC-------CCCGGcUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 111162 | 0.67 | 0.577743 |
Target: 5'- uGCGCgCUGCCgaucagGUGGUGGcGGCUGGgGAUg -3' miRNA: 3'- -UGCG-GAUGG------CGCCGCC-CCGGCUgCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 3425 | 0.67 | 0.614188 |
Target: 5'- -gGCCUccucCCGCcucGCGGGGCUggucgguGACGGCg -3' miRNA: 3'- ugCGGAu---GGCGc--CGCCCCGG-------CUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 16252 | 0.67 | 0.60575 |
Target: 5'- uCGCCgucgcCCGCGGCGgccaagagucaGGGaCCGgacGCGACg -3' miRNA: 3'- uGCGGau---GGCGCCGC-----------CCC-GGC---UGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 12604 | 0.67 | 0.60575 |
Target: 5'- gGCGCgCgguCCGCauGGCGGagcuggugaGGCCGAUGAUc -3' miRNA: 3'- -UGCG-Gau-GGCG--CCGCC---------CCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 11446 | 0.67 | 0.584256 |
Target: 5'- gACGCCgcggacggggGCCGgGGaaGGGGCggagaccgcgaggaCGACGACg -3' miRNA: 3'- -UGCGGa---------UGGCgCCg-CCCCG--------------GCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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