miRNA display CGI


Results 121 - 140 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 54248 0.67 0.587053
Target:  5'- cACGUCcGCaGCGGCaGGGC-GGCGGCg -3'
miRNA:   3'- -UGCGGaUGgCGCCGcCCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 11446 0.67 0.584256
Target:  5'- gACGCCgcggacggggGCCGgGGaaGGGGCggagaccgcgaggaCGACGACg -3'
miRNA:   3'- -UGCGGa---------UGGCgCCg-CCCCG--------------GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 23329 0.67 0.587053
Target:  5'- gGCGCCccggGCCGcCGGCGGuGuaCGaguGCGGCg -3'
miRNA:   3'- -UGCGGa---UGGC-GCCGCC-CcgGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 16252 0.67 0.60575
Target:  5'- uCGCCgucgcCCGCGGCGgccaagagucaGGGaCCGgacGCGACg -3'
miRNA:   3'- uGCGGau---GGCGCCGC-----------CCC-GGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 24915 0.67 0.614188
Target:  5'- cCGUCgcCCGCGGCGucGGGCuCGgcccgcaGCGACg -3'
miRNA:   3'- uGCGGauGGCGCCGC--CCCG-GC-------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 91862 0.67 0.59639
Target:  5'- cAUGCCcccgagGCCGCcguccGGCGcGGGC-GGCGGCg -3'
miRNA:   3'- -UGCGGa-----UGGCG-----CCGC-CCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 100788 0.67 0.600132
Target:  5'- cCGCCcGCCGCGacgccgcccguccuCGGGGUCGACcugGACg -3'
miRNA:   3'- uGCGGaUGGCGCc-------------GCCCCGGCUG---CUG- -5'
8949 3' -64.4 NC_002512.2 + 90490 0.67 0.604813
Target:  5'- gGCGuCCUcgacgggAUCGgGGCcGaGGCCGGCGGCg -3'
miRNA:   3'- -UGC-GGA-------UGGCgCCGcC-CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 204798 0.67 0.60575
Target:  5'- gACGCCcgggagguCCGCGucccgGGGGCgCGGCGGCu -3'
miRNA:   3'- -UGCGGau------GGCGCcg---CCCCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 127273 0.67 0.60575
Target:  5'- gGCGUUcccCCGggcguUGGCGGcGGCCGACGAg -3'
miRNA:   3'- -UGCGGau-GGC-----GCCGCC-CCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 192562 0.67 0.60575
Target:  5'- aGCGCgU-CCGUGGcCGGGGCCu-CGGa -3'
miRNA:   3'- -UGCGgAuGGCGCC-GCCCCGGcuGCUg -5'
8949 3' -64.4 NC_002512.2 + 224679 0.67 0.61888
Target:  5'- cCGCCgucggcuggcCCGCGGUccugcccgcccugcuGGGGCCGGCcGCc -3'
miRNA:   3'- uGCGGau--------GGCGCCG---------------CCCCGGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 3425 0.67 0.614188
Target:  5'- -gGCCUccucCCGCcucGCGGGGCUggucgguGACGGCg -3'
miRNA:   3'- ugCGGAu---GGCGc--CGCCCCGG-------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 125142 0.67 0.577743
Target:  5'- cGCGUgaACCGCGGgggccccgGGGGCgGGCgGACg -3'
miRNA:   3'- -UGCGgaUGGCGCCg-------CCCCGgCUG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 134999 0.67 0.615126
Target:  5'- gACGCCUAcCCGUucguccuggaGGauucGGGCCGGCgGACg -3'
miRNA:   3'- -UGCGGAU-GGCG----------CCgc--CCCGGCUG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 123659 0.67 0.615126
Target:  5'- aACGCC-GCgGCGGCcGGGCuCGGgGAa -3'
miRNA:   3'- -UGCGGaUGgCGCCGcCCCG-GCUgCUg -5'
8949 3' -64.4 NC_002512.2 + 9487 0.67 0.615126
Target:  5'- -gGCCcGCgaGCGGCGGGuagaCGACGGCc -3'
miRNA:   3'- ugCGGaUGg-CGCCGCCCcg--GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 95252 0.67 0.614188
Target:  5'- gGCGuCCggaggGCCGCgcggcuccugaacGGCGGGGUCGGguucccguCGGCg -3'
miRNA:   3'- -UGC-GGa----UGGCG-------------CCGCCCCGGCU--------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 128020 0.67 0.614188
Target:  5'- cGCGgCUGCUGCGGCcGGGUCGcucgcugccucugGCGGa -3'
miRNA:   3'- -UGCgGAUGGCGCCGcCCCGGC-------------UGCUg -5'
8949 3' -64.4 NC_002512.2 + 135748 0.67 0.577743
Target:  5'- cUGCCUccGCCGCGucauccGCGuccuGGCCGACGAg -3'
miRNA:   3'- uGCGGA--UGGCGC------CGCc---CCGGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.