miRNA display CGI


Results 141 - 160 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 144813 0.67 0.568465
Target:  5'- aACGCCUACgGgGGCcacgaGGGCaCGGCGcuGCu -3'
miRNA:   3'- -UGCGGAUGgCgCCGc----CCCG-GCUGC--UG- -5'
8949 3' -64.4 NC_002512.2 + 98160 0.67 0.568465
Target:  5'- gGCGgUcGCCGCGGUcuggacGGGCgCGGCGACc -3'
miRNA:   3'- -UGCgGaUGGCGCCGc-----CCCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 22524 0.68 0.53178
Target:  5'- gACGCCgaaCGCGucggugucgauCGGGGCCGGgGACu -3'
miRNA:   3'- -UGCGGaugGCGCc----------GCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 105327 0.68 0.53178
Target:  5'- -aGCCguggGCCGaguaGGCGGuGUCGAUGACc -3'
miRNA:   3'- ugCGGa---UGGCg---CCGCCcCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 135578 0.68 0.530873
Target:  5'- cGCGCCggggcgcaACCG-GGUGGacgaccgcuccccGGCCGugGACg -3'
miRNA:   3'- -UGCGGa-------UGGCgCCGCC-------------CCGGCugCUG- -5'
8949 3' -64.4 NC_002512.2 + 137309 0.68 0.522738
Target:  5'- cCGCCccucccgGCCGCGGCGucGGcGCCucCGACg -3'
miRNA:   3'- uGCGGa------UGGCGCCGC--CC-CGGcuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 152796 0.68 0.522738
Target:  5'- cCGUCUcggagguCCGCGGCGacGGCgGGCGGCg -3'
miRNA:   3'- uGCGGAu------GGCGCCGCc-CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 57863 0.68 0.522738
Target:  5'- gGCGCaUGCUGcCGGCcGGaCCGGCGACg -3'
miRNA:   3'- -UGCGgAUGGC-GCCGcCCcGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 4558 0.68 0.522738
Target:  5'- cGCGaCCgacgGCUGCGGCGucuGGGgCGGCGGa -3'
miRNA:   3'- -UGC-GGa---UGGCGCCGC---CCCgGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 32566 0.68 0.53178
Target:  5'- cCGCCgggcGCCGCGGgugcCGGGGUCGuguCGGa -3'
miRNA:   3'- uGCGGa---UGGCGCC----GCCCCGGCu--GCUg -5'
8949 3' -64.4 NC_002512.2 + 2792 0.68 0.540879
Target:  5'- -aGCCcgACC-CGGcCGGcGGCCGGCGGg -3'
miRNA:   3'- ugCGGa-UGGcGCC-GCC-CCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 104776 0.68 0.540879
Target:  5'- -gGUCggacgGCgCGUGGCGGGGuCCGcgcGCGGCg -3'
miRNA:   3'- ugCGGa----UG-GCGCCGCCCC-GGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 69115 0.68 0.550028
Target:  5'- uGCGCCggccCCGCuccGGgaccuccgugccCGGGGCCGGCGcCg -3'
miRNA:   3'- -UGCGGau--GGCG---CC------------GCCCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 153734 0.68 0.550028
Target:  5'- gGCGCUguCCGUGGgGGGGuggucgaauCgGACGACg -3'
miRNA:   3'- -UGCGGauGGCGCCgCCCC---------GgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 81914 0.68 0.550028
Target:  5'- uCGUgcGCCGUGGagGGGGaCGACGACg -3'
miRNA:   3'- uGCGgaUGGCGCCg-CCCCgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 227078 0.68 0.550028
Target:  5'- uAUGUCUACUGgagacacaGGUGGGGCgaacgaggcggCGACGACg -3'
miRNA:   3'- -UGCGGAUGGCg-------CCGCCCCG-----------GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 124244 0.68 0.550028
Target:  5'- uCGcCCUACCuCGGCcGGGucucggagaCCGACGACg -3'
miRNA:   3'- uGC-GGAUGGcGCCGcCCC---------GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 56558 0.68 0.549111
Target:  5'- gUGCCgggACCgaagaccccgcagGCGGCGuuGGaGCCGAUGACg -3'
miRNA:   3'- uGCGGa--UGG-------------CGCCGC--CC-CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 104992 0.68 0.540879
Target:  5'- gACGCCgaacggucGCCGUGaCGGGGCCGcCGcCc -3'
miRNA:   3'- -UGCGGa-------UGGCGCcGCCCCGGCuGCuG- -5'
8949 3' -64.4 NC_002512.2 + 184161 0.68 0.540879
Target:  5'- aGCGCCaUGgCGUagGGCGGuuGGCCGaACGAUa -3'
miRNA:   3'- -UGCGG-AUgGCG--CCGCC--CCGGC-UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.