miRNA display CGI


Results 161 - 180 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 103241 0.68 0.513755
Target:  5'- cCGUCgacgGCCGCGGCGaGGGCaugGAgGAg -3'
miRNA:   3'- uGCGGa---UGGCGCCGC-CCCGg--CUgCUg -5'
8949 3' -64.4 NC_002512.2 + 124244 0.68 0.550028
Target:  5'- uCGcCCUACCuCGGCcGGGucucggagaCCGACGACg -3'
miRNA:   3'- uGC-GGAUGGcGCCGcCCC---------GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 227078 0.68 0.550028
Target:  5'- uAUGUCUACUGgagacacaGGUGGGGCgaacgaggcggCGACGACg -3'
miRNA:   3'- -UGCGGAUGGCg-------CCGCCCCG-----------GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 81914 0.68 0.550028
Target:  5'- uCGUgcGCCGUGGagGGGGaCGACGACg -3'
miRNA:   3'- uGCGgaUGGCGCCg-CCCCgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 227599 0.68 0.559226
Target:  5'- cCGCC-ACCcgcaGCGGCcggaGGGCgGGCGGCg -3'
miRNA:   3'- uGCGGaUGG----CGCCGc---CCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 104880 0.68 0.502174
Target:  5'- gGCGCCgACgGCGcGaCGGGGCCGGguccagggacagguUGGCg -3'
miRNA:   3'- -UGCGGaUGgCGC-C-GCCCCGGCU--------------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 44406 0.68 0.504836
Target:  5'- uGCGCCaugACCuGCGGCGGcaGGaccaCGGCGAa -3'
miRNA:   3'- -UGCGGa--UGG-CGCCGCC--CCg---GCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 191308 0.68 0.504836
Target:  5'- --aCCaACCGCGGCGGGGUCaagguggucuGCGGCg -3'
miRNA:   3'- ugcGGaUGGCGCCGCCCCGGc---------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 123120 0.68 0.508396
Target:  5'- cCGCC-GCCGuCGGCGgccgucccgggggacGGGgCGGCGGCg -3'
miRNA:   3'- uGCGGaUGGC-GCCGC---------------CCCgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 139268 0.68 0.559226
Target:  5'- cGCGCCgcCCgGCGcGCGGGGgCGAaggggGGCg -3'
miRNA:   3'- -UGCGGauGG-CGC-CGCCCCgGCUg----CUG- -5'
8949 3' -64.4 NC_002512.2 + 133667 0.68 0.559226
Target:  5'- cCGCCgccGCCGCGGCcgccGuGGCCGACcucGCg -3'
miRNA:   3'- uGCGGa--UGGCGCCGc---C-CCGGCUGc--UG- -5'
8949 3' -64.4 NC_002512.2 + 48486 0.68 0.559226
Target:  5'- aACGCgUcCC-CGGCGGaGGCCagggcgcacGACGACg -3'
miRNA:   3'- -UGCGgAuGGcGCCGCC-CCGG---------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 229024 0.68 0.559226
Target:  5'- -gGUgUGCaGCGGUGGGGCUGAUaauGGCa -3'
miRNA:   3'- ugCGgAUGgCGCCGCCCCGGCUG---CUG- -5'
8949 3' -64.4 NC_002512.2 + 9516 0.68 0.559226
Target:  5'- -gGCCccagcACgGCGGCGGcGGCC-ACGGCc -3'
miRNA:   3'- ugCGGa----UGgCGCCGCC-CCGGcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 26928 0.68 0.558304
Target:  5'- gGCGCCUgaaacugaccucuACCgGCGGCGGaGCCaGACccuGACg -3'
miRNA:   3'- -UGCGGA-------------UGG-CGCCGCCcCGG-CUG---CUG- -5'
8949 3' -64.4 NC_002512.2 + 14476 0.68 0.558304
Target:  5'- gGCGCCcuuggGCCaggGCaGGgcgaacauggugcCGGGGCUGGCGACg -3'
miRNA:   3'- -UGCGGa----UGG---CG-CC-------------GCCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 19355 0.68 0.550028
Target:  5'- gAUGCCggACCGUcG-GGGGCuCGGCGGCc -3'
miRNA:   3'- -UGCGGa-UGGCGcCgCCCCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 69115 0.68 0.550028
Target:  5'- uGCGCCggccCCGCuccGGgaccuccgugccCGGGGCCGGCGcCg -3'
miRNA:   3'- -UGCGGau--GGCG---CC------------GCCCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 153734 0.68 0.550028
Target:  5'- gGCGCUguCCGUGGgGGGGuggucgaauCgGACGACg -3'
miRNA:   3'- -UGCGGauGGCGCCgCCCC---------GgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 118210 0.68 0.513755
Target:  5'- cCGUCUGgUGCGaCGGGGCCcucgugcucgggGACGGCa -3'
miRNA:   3'- uGCGGAUgGCGCcGCCCCGG------------CUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.