miRNA display CGI


Results 81 - 100 of 401 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 202521 0.72 0.344138
Target:  5'- gGCGgagGCgGCGGCgGGGGCgGACGACc -3'
miRNA:   3'- -UGCggaUGgCGCCG-CCCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 156512 0.72 0.344138
Target:  5'- -gGCCUGg-GCGGCGGGGCgcgggggucCGGCGGCg -3'
miRNA:   3'- ugCGGAUggCGCCGCCCCG---------GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 138198 0.72 0.344138
Target:  5'- cGCGgacauCCUACCGU--CGGGGCCGACgGACg -3'
miRNA:   3'- -UGC-----GGAUGGCGccGCCCCGGCUG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 203140 0.72 0.337127
Target:  5'- -gGCCaucACCGUGGCGuacagcGGcGCCGGCGACg -3'
miRNA:   3'- ugCGGa--UGGCGCCGC------CC-CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 182067 0.72 0.33022
Target:  5'- cGCGCCgaccucaGCCGCGGCuccGGGGUCugGGCGAa -3'
miRNA:   3'- -UGCGGa------UGGCGCCG---CCCCGG--CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 92689 0.72 0.323419
Target:  5'- cGCGCCgcccACCG-GGCGGa-CCGACGACg -3'
miRNA:   3'- -UGCGGa---UGGCgCCGCCccGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 191029 0.72 0.323419
Target:  5'- gUGCCUGCga-GGCGGGGCgCGGCGcACg -3'
miRNA:   3'- uGCGGAUGgcgCCGCCCCG-GCUGC-UG- -5'
8949 3' -64.4 NC_002512.2 + 186339 0.72 0.316722
Target:  5'- gACGCCgucauCCGCGacaacgucuuCGGGGCCGGgGACg -3'
miRNA:   3'- -UGCGGau---GGCGCc---------GCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 175254 0.72 0.310131
Target:  5'- uCGCCaggGCCGCgcucGGCGGGuaGCUGGCGGCc -3'
miRNA:   3'- uGCGGa--UGGCG----CCGCCC--CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 13562 0.71 0.358472
Target:  5'- cCGCCgACCGCGuCGGGGCCG-CaGAUg -3'
miRNA:   3'- uGCGGaUGGCGCcGCCCCGGCuG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 103457 0.71 0.383784
Target:  5'- uCGCCgGCCG-GGCGGGaggaggagaggcggcGUCGACGGCg -3'
miRNA:   3'- uGCGGaUGGCgCCGCCC---------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 90910 0.71 0.388372
Target:  5'- -gGCCggacuggcgGCCGCGaaCGGGGCCGGCG-Cg -3'
miRNA:   3'- ugCGGa--------UGGCGCc-GCCCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 120502 0.71 0.368752
Target:  5'- gACGCCgccgAUCGCGGUgacGGGGaggcgcggcuuucccCCGGCGGCu -3'
miRNA:   3'- -UGCGGa---UGGCGCCG---CCCC---------------GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 8449 0.71 0.388372
Target:  5'- cGCGCCccgGCCGCGGUccgcauGGcGGCCGuCgGACa -3'
miRNA:   3'- -UGCGGa--UGGCGCCG------CC-CCGGCuG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 120778 0.71 0.380745
Target:  5'- uCGgCgGCCGuCGGCGGGGgCGGCGGg -3'
miRNA:   3'- uGCgGaUGGC-GCCGCCCCgGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 7359 0.71 0.373219
Target:  5'- -gGCCcACCGCGaCGGcGGCCG-CGGCg -3'
miRNA:   3'- ugCGGaUGGCGCcGCC-CCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 65516 0.71 0.351253
Target:  5'- -gGCCUGCUGCuGGCGGcGGaaGAUGAUg -3'
miRNA:   3'- ugCGGAUGGCG-CCGCC-CCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 15639 0.71 0.388372
Target:  5'- aACuCCUcgGCCGCgGGCGGcGaGCCGACGAg -3'
miRNA:   3'- -UGcGGA--UGGCG-CCGCC-C-CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 110263 0.71 0.388372
Target:  5'- aGCGCCgcGCUGgGGCGGGaGgCGAgCGGCg -3'
miRNA:   3'- -UGCGGa-UGGCgCCGCCC-CgGCU-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 29094 0.71 0.380745
Target:  5'- cCGCCUcgucuuCgGCGGCGGcGGCCauGGCGAUg -3'
miRNA:   3'- uGCGGAu-----GgCGCCGCC-CCGG--CUGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.