Results 101 - 120 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
8949 | 3' | -64.4 | NC_002512.2 | + | 8449 | 0.71 | 0.388372 |
Target: 5'- cGCGCCccgGCCGCGGUccgcauGGcGGCCGuCgGACa -3' miRNA: 3'- -UGCGGa--UGGCGCCG------CC-CCGGCuG-CUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 15639 | 0.71 | 0.388372 |
Target: 5'- aACuCCUcgGCCGCgGGCGGcGaGCCGACGAg -3' miRNA: 3'- -UGcGGA--UGGCG-CCGCC-C-CGGCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 103457 | 0.71 | 0.383784 |
Target: 5'- uCGCCgGCCG-GGCGGGaggaggagaggcggcGUCGACGGCg -3' miRNA: 3'- uGCGGaUGGCgCCGCCC---------------CGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 120502 | 0.71 | 0.368752 |
Target: 5'- gACGCCgccgAUCGCGGUgacGGGGaggcgcggcuuucccCCGGCGGCu -3' miRNA: 3'- -UGCGGa---UGGCGCCG---CCCC---------------GGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 29094 | 0.71 | 0.380745 |
Target: 5'- cCGCCUcgucuuCgGCGGCGGcGGCCauGGCGAUg -3' miRNA: 3'- uGCGGAu-----GgCGCCGCC-CCGG--CUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 110263 | 0.71 | 0.388372 |
Target: 5'- aGCGCCgcGCUGgGGCGGGaGgCGAgCGGCg -3' miRNA: 3'- -UGCGGa-UGGCgCCGCCC-CgGCU-GCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 149220 | 0.71 | 0.388372 |
Target: 5'- uCGCC-GCCGCcGCGGGaCCGACGGa -3' miRNA: 3'- uGCGGaUGGCGcCGCCCcGGCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 103325 | 0.71 | 0.387605 |
Target: 5'- -gGCCgagGCCcggGCGGCguagcccGGGGCgGACGGCa -3' miRNA: 3'- ugCGGa--UGG---CGCCG-------CCCCGgCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 157128 | 0.71 | 0.380745 |
Target: 5'- gGCGUCgggggucgGCgGCGGgccCGGGGCgGGCGGCg -3' miRNA: 3'- -UGCGGa-------UGgCGCC---GCCCCGgCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 160820 | 0.71 | 0.351253 |
Target: 5'- cCGCCccggcACCaGCaGGCGGgcGGCCGGCGGCg -3' miRNA: 3'- uGCGGa----UGG-CG-CCGCC--CCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 120778 | 0.71 | 0.380745 |
Target: 5'- uCGgCgGCCGuCGGCGGGGgCGGCGGg -3' miRNA: 3'- uGCgGaUGGC-GCCGCCCCgGCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 7359 | 0.71 | 0.373219 |
Target: 5'- -gGCCcACCGCGaCGGcGGCCG-CGGCg -3' miRNA: 3'- ugCGGaUGGCGCcGCC-CCGGCuGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 90910 | 0.71 | 0.388372 |
Target: 5'- -gGCCggacuggcgGCCGCGaaCGGGGCCGGCG-Cg -3' miRNA: 3'- ugCGGa--------UGGCGCc-GCCCCGGCUGCuG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 72793 | 0.7 | 0.396099 |
Target: 5'- uCGCCgggacgggcCCGCcGUGGGcGCCGGCGACc -3' miRNA: 3'- uGCGGau-------GGCGcCGCCC-CGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 40361 | 0.7 | 0.396099 |
Target: 5'- gACGCCgACCGCGGCGagcccGGGCCcggaGCGuCu -3' miRNA: 3'- -UGCGGaUGGCGCCGC-----CCCGGc---UGCuG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 79144 | 0.7 | 0.396099 |
Target: 5'- -gGUCUggGCCGC-GCGcGGGCCGACGGg -3' miRNA: 3'- ugCGGA--UGGCGcCGC-CCCGGCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 92538 | 0.7 | 0.411846 |
Target: 5'- uAC-CCgGCCGCGGCGGccgcGGC-GACGACg -3' miRNA: 3'- -UGcGGaUGGCGCCGCC----CCGgCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 75276 | 0.7 | 0.411846 |
Target: 5'- gGCGgCgACgGCGGCGGcGGC-GGCGACg -3' miRNA: 3'- -UGCgGaUGgCGCCGCC-CCGgCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 102904 | 0.7 | 0.41105 |
Target: 5'- uGCGCCUGgCGCGGuCGacggccacGGGCCccaggucguaacaGGCGACg -3' miRNA: 3'- -UGCGGAUgGCGCC-GC--------CCCGG-------------CUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 209497 | 0.7 | 0.401566 |
Target: 5'- cCGUCUACaGCGGCGGGGaCCGcuguuacgucuacaGCGAg -3' miRNA: 3'- uGCGGAUGgCGCCGCCCC-GGC--------------UGCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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