miRNA display CGI


Results 121 - 140 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 106454 0.7 0.411846
Target:  5'- aACGCCUgucgggggAUCGCgaacacgaacggGGCcaGGGCCGACGGCa -3'
miRNA:   3'- -UGCGGA--------UGGCG------------CCGc-CCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 17873 0.7 0.415042
Target:  5'- cGCGCaggGCCcgggggacgugauagGCGGCGGcGGCCccgagGACGACg -3'
miRNA:   3'- -UGCGga-UGG---------------CGCCGCC-CCGG-----CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 81794 0.7 0.419864
Target:  5'- gGCGCCgccGCCGCcGCcgGGGGaCgGACGACc -3'
miRNA:   3'- -UGCGGa--UGGCGcCG--CCCC-GgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 80657 0.7 0.423097
Target:  5'- gGCGCCggguccgucggucCCGCGGCGGcGGC-GACGGg -3'
miRNA:   3'- -UGCGGau-----------GGCGCCGCC-CCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 133785 0.7 0.427975
Target:  5'- gACGacgGCgGCGGCGGGGaCGACGGu -3'
miRNA:   3'- -UGCggaUGgCGCCGCCCCgGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 25200 0.7 0.436179
Target:  5'- cGCGUCcGCCGCGacggaGCGGGagcgagccGCCGGCGAUc -3'
miRNA:   3'- -UGCGGaUGGCGC-----CGCCC--------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 83198 0.7 0.436179
Target:  5'- uCGCCcguCCGCGcGCGGGGCgGGgGGa -3'
miRNA:   3'- uGCGGau-GGCGC-CGCCCCGgCUgCUg -5'
8949 3' -64.4 NC_002512.2 + 103195 0.7 0.444472
Target:  5'- -aGCCUGCCcgGCGaGCGGGGguauCCGagGCGGCu -3'
miRNA:   3'- ugCGGAUGG--CGC-CGCCCC----GGC--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 40361 0.7 0.396099
Target:  5'- gACGCCgACCGCGGCGagcccGGGCCcggaGCGuCu -3'
miRNA:   3'- -UGCGGaUGGCGCCGC-----CCCGGc---UGCuG- -5'
8949 3' -64.4 NC_002512.2 + 79144 0.7 0.396099
Target:  5'- -gGUCUggGCCGC-GCGcGGGCCGACGGg -3'
miRNA:   3'- ugCGGA--UGGCGcCGC-CCCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 92538 0.7 0.411846
Target:  5'- uAC-CCgGCCGCGGCGGccgcGGC-GACGACg -3'
miRNA:   3'- -UGcGGaUGGCGCCGCC----CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 115863 0.7 0.411846
Target:  5'- gGCGUUcGCCGaGGCGGGcccGCCGgACGACg -3'
miRNA:   3'- -UGCGGaUGGCgCCGCCC---CGGC-UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 213547 0.7 0.411846
Target:  5'- aGCGUCUGCUGC-GCGGGGuCCGccuCGAg -3'
miRNA:   3'- -UGCGGAUGGCGcCGCCCC-GGCu--GCUg -5'
8949 3' -64.4 NC_002512.2 + 204979 0.7 0.416646
Target:  5'- gACGCCgcgggcgacggggACCGgaaGGCGGGGgCGAaaCGACg -3'
miRNA:   3'- -UGCGGa------------UGGCg--CCGCCCCgGCU--GCUG- -5'
8949 3' -64.4 NC_002512.2 + 108519 0.7 0.419864
Target:  5'- gGCGCCcgACCG-GcCGGGGacCCGACGGCg -3'
miRNA:   3'- -UGCGGa-UGGCgCcGCCCC--GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 225482 0.7 0.427975
Target:  5'- cCGCCgucgACCGCGaucuaCGGGGCCGccGCGGg -3'
miRNA:   3'- uGCGGa---UGGCGCc----GCCCCGGC--UGCUg -5'
8949 3' -64.4 NC_002512.2 + 117704 0.7 0.436179
Target:  5'- gGCGCac-CUGCGGCGGGuGCgCaGCGACa -3'
miRNA:   3'- -UGCGgauGGCGCCGCCC-CG-GcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 128272 0.7 0.444472
Target:  5'- uCGCgU-CC-CGGCGccGGGCCGACGGCc -3'
miRNA:   3'- uGCGgAuGGcGCCGC--CCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 204010 0.7 0.444472
Target:  5'- cCGCCU-CUuCGGCuucgugcGGGCCGACGGCg -3'
miRNA:   3'- uGCGGAuGGcGCCGc------CCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 4912 0.7 0.395322
Target:  5'- gGCGCCgccgccGCCGCccagcggguagacGGCGGaGCCGAgCGACa -3'
miRNA:   3'- -UGCGGa-----UGGCG-------------CCGCCcCGGCU-GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.