miRNA display CGI


Results 141 - 160 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 83198 0.7 0.436179
Target:  5'- uCGCCcguCCGCGcGCGGGGCgGGgGGa -3'
miRNA:   3'- uGCGGau-GGCGC-CGCCCCGgCUgCUg -5'
8949 3' -64.4 NC_002512.2 + 25200 0.7 0.436179
Target:  5'- cGCGUCcGCCGCGacggaGCGGGagcgagccGCCGGCGAUc -3'
miRNA:   3'- -UGCGGaUGGCGC-----CGCCC--------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 102904 0.7 0.41105
Target:  5'- uGCGCCUGgCGCGGuCGacggccacGGGCCccaggucguaacaGGCGACg -3'
miRNA:   3'- -UGCGGAUgGCGCC-GC--------CCCGG-------------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 133785 0.7 0.427975
Target:  5'- gACGacgGCgGCGGCGGGGaCGACGGu -3'
miRNA:   3'- -UGCggaUGgCGCCGCCCCgGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 80657 0.7 0.423097
Target:  5'- gGCGCCggguccgucggucCCGCGGCGGcGGC-GACGGg -3'
miRNA:   3'- -UGCGGau-----------GGCGCCGCC-CCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 81794 0.7 0.419864
Target:  5'- gGCGCCgccGCCGCcGCcgGGGGaCgGACGACc -3'
miRNA:   3'- -UGCGGa--UGGCGcCG--CCCC-GgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 86323 0.69 0.48633
Target:  5'- cCGCCggcCCGCccGCGGGgagacgcgcggccGCCGACGGCg -3'
miRNA:   3'- uGCGGau-GGCGc-CGCCC-------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 101655 0.69 0.495103
Target:  5'- aGCGCggcgGCCGCGGaCGccGGGCCGAucuacguCGGCg -3'
miRNA:   3'- -UGCGga--UGGCGCC-GC--CCCGGCU-------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 5256 0.69 0.495103
Target:  5'- -gGCCgagGCCGCGGCGGcgaccccgagcccGGUCGGCa-- -3'
miRNA:   3'- ugCGGa--UGGCGCCGCC-------------CCGGCUGcug -5'
8949 3' -64.4 NC_002512.2 + 47443 0.69 0.487204
Target:  5'- cACGCCcGCa-CGGCGGaGGCCGA-GGCc -3'
miRNA:   3'- -UGCGGaUGgcGCCGCC-CCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 131035 0.69 0.487204
Target:  5'- gGCGUCgggGCCGCGGgGGaGGaCGGCGcCg -3'
miRNA:   3'- -UGCGGa--UGGCGCCgCC-CCgGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 56267 0.69 0.487204
Target:  5'- uCGCC-GCCGCGGCGGaGGCgcuccCGcuacuCGACa -3'
miRNA:   3'- uGCGGaUGGCGCCGCC-CCG-----GCu----GCUG- -5'
8949 3' -64.4 NC_002512.2 + 10843 0.69 0.495985
Target:  5'- -aGCC--CCGCGcCGcGGCCGACGACg -3'
miRNA:   3'- ugCGGauGGCGCcGCcCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 35273 0.69 0.469868
Target:  5'- cGCGgCgacgGCCGCGGCGGcGGa-GGCGAUc -3'
miRNA:   3'- -UGCgGa---UGGCGCCGCC-CCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 134313 0.69 0.495985
Target:  5'- gACGUC-GCCGgGGCcGGcGCCGACGGa -3'
miRNA:   3'- -UGCGGaUGGCgCCGcCC-CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 152499 0.69 0.496867
Target:  5'- gGCGCCacggguggagcguuCCGgGGuCGGGGUcuCGGCGACg -3'
miRNA:   3'- -UGCGGau------------GGCgCC-GCCCCG--GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 96001 0.69 0.469868
Target:  5'- gGCGCCgcgACCGCcaGGCGGaacGCCccguacaggggGACGACg -3'
miRNA:   3'- -UGCGGa--UGGCG--CCGCCc--CGG-----------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 130150 0.69 0.469868
Target:  5'- -gGCCgcgggGCCcgGCGGCGGgccGGCCcGCGACg -3'
miRNA:   3'- ugCGGa----UGG--CGCCGCC---CCGGcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 102044 0.69 0.452853
Target:  5'- -aGCU--UCGCGGCGGacgccGCCGACGACc -3'
miRNA:   3'- ugCGGauGGCGCCGCCc----CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 88595 0.69 0.495985
Target:  5'- cCGCCggugccGCCGUGcGCGcGGCCGGCGuCg -3'
miRNA:   3'- uGCGGa-----UGGCGC-CGCcCCGGCUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.