Results 121 - 140 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8949 | 3' | -64.4 | NC_002512.2 | + | 160751 | 0.7 | 0.407081 |
Target: 5'- gGCGCCggccCCGgGcacggaggucccggaGCGGGGCCGGCGcaGCa -3' miRNA: 3'- -UGCGGau--GGCgC---------------CGCCCCGGCUGC--UG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 102904 | 0.7 | 0.41105 |
Target: 5'- uGCGCCUGgCGCGGuCGacggccacGGGCCccaggucguaacaGGCGACg -3' miRNA: 3'- -UGCGGAUgGCGCC-GC--------CCCGG-------------CUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 92538 | 0.7 | 0.411846 |
Target: 5'- uAC-CCgGCCGCGGCGGccgcGGC-GACGACg -3' miRNA: 3'- -UGcGGaUGGCGCCGCC----CCGgCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 115863 | 0.7 | 0.411846 |
Target: 5'- gGCGUUcGCCGaGGCGGGcccGCCGgACGACg -3' miRNA: 3'- -UGCGGaUGGCgCCGCCC---CGGC-UGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 75276 | 0.7 | 0.411846 |
Target: 5'- gGCGgCgACgGCGGCGGcGGC-GGCGACg -3' miRNA: 3'- -UGCgGaUGgCGCCGCC-CCGgCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 213547 | 0.7 | 0.411846 |
Target: 5'- aGCGUCUGCUGC-GCGGGGuCCGccuCGAg -3' miRNA: 3'- -UGCGGAUGGCGcCGCCCC-GGCu--GCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 30662 | 0.7 | 0.411846 |
Target: 5'- uGCGCCggaucUACCggGCGGCGcGGUCGgACGACa -3' miRNA: 3'- -UGCGG-----AUGG--CGCCGCcCCGGC-UGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 6420 | 0.7 | 0.411846 |
Target: 5'- gGCGCUggggaaggcgGCCGUcuGGCGGGcGCCGA-GACa -3' miRNA: 3'- -UGCGGa---------UGGCG--CCGCCC-CGGCUgCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 122041 | 0.7 | 0.411846 |
Target: 5'- cGCGCaCgcCCGgGGCGGcGUCGGCGGCu -3' miRNA: 3'- -UGCG-GauGGCgCCGCCcCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 18141 | 0.7 | 0.411846 |
Target: 5'- aGCGCCcggGCCGCGucGCGGGccagGCCGA-GGCa -3' miRNA: 3'- -UGCGGa--UGGCGC--CGCCC----CGGCUgCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 106454 | 0.7 | 0.411846 |
Target: 5'- aACGCCUgucgggggAUCGCgaacacgaacggGGCcaGGGCCGACGGCa -3' miRNA: 3'- -UGCGGA--------UGGCG------------CCGc-CCCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 17873 | 0.7 | 0.415042 |
Target: 5'- cGCGCaggGCCcgggggacgugauagGCGGCGGcGGCCccgagGACGACg -3' miRNA: 3'- -UGCGga-UGG---------------CGCCGCC-CCGG-----CUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 204979 | 0.7 | 0.416646 |
Target: 5'- gACGCCgcgggcgacggggACCGgaaGGCGGGGgCGAaaCGACg -3' miRNA: 3'- -UGCGGa------------UGGCg--CCGCCCCgGCU--GCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 4383 | 0.7 | 0.419058 |
Target: 5'- -aGCCcgggacccCCGCGGCGGccccguagaucgcGGUCGACGGCg -3' miRNA: 3'- ugCGGau------GGCGCCGCC-------------CCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 108519 | 0.7 | 0.419864 |
Target: 5'- gGCGCCcgACCG-GcCGGGGacCCGACGGCg -3' miRNA: 3'- -UGCGGa-UGGCgCcGCCCC--GGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 81794 | 0.7 | 0.419864 |
Target: 5'- gGCGCCgccGCCGCcGCcgGGGGaCgGACGACc -3' miRNA: 3'- -UGCGGa--UGGCGcCG--CCCC-GgCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 80657 | 0.7 | 0.423097 |
Target: 5'- gGCGCCggguccgucggucCCGCGGCGGcGGC-GACGGg -3' miRNA: 3'- -UGCGGau-----------GGCGCCGCC-CCGgCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 133785 | 0.7 | 0.427975 |
Target: 5'- gACGacgGCgGCGGCGGGGaCGACGGu -3' miRNA: 3'- -UGCggaUGgCGCCGCCCCgGCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 225482 | 0.7 | 0.427975 |
Target: 5'- cCGCCgucgACCGCGaucuaCGGGGCCGccGCGGg -3' miRNA: 3'- uGCGGa---UGGCGCc----GCCCCGGC--UGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 83198 | 0.7 | 0.436179 |
Target: 5'- uCGCCcguCCGCGcGCGGGGCgGGgGGa -3' miRNA: 3'- uGCGGau-GGCGC-CGCCCCGgCUgCUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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