miRNA display CGI


Results 141 - 160 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 117704 0.7 0.436179
Target:  5'- gGCGCac-CUGCGGCGGGuGCgCaGCGACa -3'
miRNA:   3'- -UGCGgauGGCGCCGCCC-CG-GcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 25200 0.7 0.436179
Target:  5'- cGCGUCcGCCGCGacggaGCGGGagcgagccGCCGGCGAUc -3'
miRNA:   3'- -UGCGGaUGGCGC-----CGCCC--------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 33498 0.7 0.437004
Target:  5'- cGCGCCagacCCGCGGCGucccgaagugagcccGGCCGGCGGa -3'
miRNA:   3'- -UGCGGau--GGCGCCGCc--------------CCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 204010 0.7 0.444472
Target:  5'- cCGCCU-CUuCGGCuucgugcGGGCCGACGGCg -3'
miRNA:   3'- uGCGGAuGGcGCCGc------CCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 103195 0.7 0.444472
Target:  5'- -aGCCUGCCcgGCGaGCGGGGguauCCGagGCGGCu -3'
miRNA:   3'- ugCGGAUGG--CGC-CGCCCC----GGC--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 128272 0.7 0.444472
Target:  5'- uCGCgU-CC-CGGCGccGGGCCGACGGCc -3'
miRNA:   3'- uGCGgAuGGcGCCGC--CCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 225410 0.69 0.452853
Target:  5'- gGCGCCgggGUCGgGGUcggguuGGGGCCGACGcCg -3'
miRNA:   3'- -UGCGGa--UGGCgCCG------CCCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 98309 0.69 0.452853
Target:  5'- gACGUCUuucCCGaggGGCucGGGGCCGGgGACg -3'
miRNA:   3'- -UGCGGAu--GGCg--CCG--CCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 90937 0.69 0.452853
Target:  5'- gGCGCg-ACCGgGGCGugcguGGGCgCGACGAUc -3'
miRNA:   3'- -UGCGgaUGGCgCCGC-----CCCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 102477 0.69 0.452853
Target:  5'- cGCGCCcgUCGCGGUGGcGGUCccgcaGGCGGCg -3'
miRNA:   3'- -UGCGGauGGCGCCGCC-CCGG-----CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 4093 0.69 0.452853
Target:  5'- -gGCCgcCCGCGGCccGGCCGGCG-Ca -3'
miRNA:   3'- ugCGGauGGCGCCGccCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 102044 0.69 0.452853
Target:  5'- -aGCU--UCGCGGCGGacgccGCCGACGACc -3'
miRNA:   3'- ugCGGauGGCGCCGCCc----CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 97306 0.69 0.452853
Target:  5'- uCGCCgaaccccugGCCGCGcccgcCGGGGUCGAgGGCg -3'
miRNA:   3'- uGCGGa--------UGGCGCc----GCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 89624 0.69 0.461319
Target:  5'- -gGCCggACUGCGGacgaagccgaCGGGGCgGACGAa -3'
miRNA:   3'- ugCGGa-UGGCGCC----------GCCCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 17433 0.69 0.461319
Target:  5'- gAUGCCcuccUCGCGGCGGucgcGGCCGGcCGGCc -3'
miRNA:   3'- -UGCGGau--GGCGCCGCC----CCGGCU-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 41088 0.69 0.461319
Target:  5'- -aGCC-GCCGCGauCGGGGCCGcCGAg -3'
miRNA:   3'- ugCGGaUGGCGCc-GCCCCGGCuGCUg -5'
8949 3' -64.4 NC_002512.2 + 7705 0.69 0.461319
Target:  5'- gACGCCgGCCGCGGCccGGGaGuaGGCGuCg -3'
miRNA:   3'- -UGCGGaUGGCGCCG--CCC-CggCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 95879 0.69 0.462171
Target:  5'- cGCGCCgaggaucucgaggucGCC-CGGcCGGGuGCCGACGAg -3'
miRNA:   3'- -UGCGGa--------------UGGcGCC-GCCC-CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 130150 0.69 0.469868
Target:  5'- -gGCCgcgggGCCcgGCGGCGGgccGGCCcGCGACg -3'
miRNA:   3'- ugCGGa----UGG--CGCCGCC---CCGGcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 147695 0.69 0.469868
Target:  5'- gACGCCgGCCGaCGGCGgacGGGCUcuCGACc -3'
miRNA:   3'- -UGCGGaUGGC-GCCGC---CCCGGcuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.