miRNA display CGI


Results 161 - 180 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 130150 0.69 0.469868
Target:  5'- -gGCCgcgggGCCcgGCGGCGGgccGGCCcGCGACg -3'
miRNA:   3'- ugCGGa----UGG--CGCCGCC---CCGGcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 35273 0.69 0.469868
Target:  5'- cGCGgCgacgGCCGCGGCGGcGGa-GGCGAUc -3'
miRNA:   3'- -UGCgGa---UGGCGCCGCC-CCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 158980 0.69 0.469868
Target:  5'- uCGgCgGCCaCGGCGGGGCggaGGCGGCg -3'
miRNA:   3'- uGCgGaUGGcGCCGCCCCGg--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 107209 0.69 0.469868
Target:  5'- -aGCCggGCCGCGGCcgGGGaGCCG-CGGu -3'
miRNA:   3'- ugCGGa-UGGCGCCG--CCC-CGGCuGCUg -5'
8949 3' -64.4 NC_002512.2 + 147695 0.69 0.469868
Target:  5'- gACGCCgGCCGaCGGCGgacGGGCUcuCGACc -3'
miRNA:   3'- -UGCGGaUGGC-GCCGC---CCCGGcuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 192598 0.69 0.469868
Target:  5'- cCG-CUGCUGCGGCGcgcgcGGCgGGCGACg -3'
miRNA:   3'- uGCgGAUGGCGCCGCc----CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 225725 0.69 0.477631
Target:  5'- cCGCgaGCCGCGGCgacucgcucagucGGGGCgCGGCcggGACa -3'
miRNA:   3'- uGCGgaUGGCGCCG-------------CCCCG-GCUG---CUG- -5'
8949 3' -64.4 NC_002512.2 + 228569 0.69 0.478498
Target:  5'- gACGCUuccuUACCGCGGUcGuGUCGGCGGCa -3'
miRNA:   3'- -UGCGG----AUGGCGCCGcCcCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 101904 0.69 0.478498
Target:  5'- gACGCCgacggggGCgGCGuguucuccauGCGGGGaCCGACGGa -3'
miRNA:   3'- -UGCGGa------UGgCGC----------CGCCCC-GGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 224967 0.69 0.478498
Target:  5'- cCGUCUAcCCGCugGGCGGcGGC-GGCGGCg -3'
miRNA:   3'- uGCGGAU-GGCG--CCGCC-CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 132693 0.69 0.478498
Target:  5'- cCGCC-GCCGCaGaCGGGcGUCGugGGCg -3'
miRNA:   3'- uGCGGaUGGCGcC-GCCC-CGGCugCUG- -5'
8949 3' -64.4 NC_002512.2 + 101837 0.69 0.478498
Target:  5'- gACGCCgcgACCGU--CGGGGCCGugcagcucuuCGACg -3'
miRNA:   3'- -UGCGGa--UGGCGccGCCCCGGCu---------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 126644 0.69 0.478498
Target:  5'- cAUGCCcucGCCGCGGCcgucgacGGGC-GGCGACg -3'
miRNA:   3'- -UGCGGa--UGGCGCCGc------CCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 86323 0.69 0.48633
Target:  5'- cCGCCggcCCGCccGCGGGgagacgcgcggccGCCGACGGCg -3'
miRNA:   3'- uGCGGau-GGCGc-CGCCC-------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 47443 0.69 0.487204
Target:  5'- cACGCCcGCa-CGGCGGaGGCCGA-GGCc -3'
miRNA:   3'- -UGCGGaUGgcGCCGCC-CCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 131035 0.69 0.487204
Target:  5'- gGCGUCgggGCCGCGGgGGaGGaCGGCGcCg -3'
miRNA:   3'- -UGCGGa--UGGCGCCgCC-CCgGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 56267 0.69 0.487204
Target:  5'- uCGCC-GCCGCGGCGGaGGCgcuccCGcuacuCGACa -3'
miRNA:   3'- uGCGGaUGGCGCCGCC-CCG-----GCu----GCUG- -5'
8949 3' -64.4 NC_002512.2 + 101655 0.69 0.495103
Target:  5'- aGCGCggcgGCCGCGGaCGccGGGCCGAucuacguCGGCg -3'
miRNA:   3'- -UGCGga--UGGCGCC-GC--CCCGGCU-------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 130758 0.69 0.495103
Target:  5'- uUGCUaaagaucGCCGCGGCGcggaccacgaggaGGGCCGcCGACg -3'
miRNA:   3'- uGCGGa------UGGCGCCGC-------------CCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 5256 0.69 0.495103
Target:  5'- -gGCCgagGCCGCGGCGGcgaccccgagcccGGUCGGCa-- -3'
miRNA:   3'- ugCGGa--UGGCGCCGCC-------------CCGGCUGcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.