miRNA display CGI


Results 101 - 120 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 90490 0.67 0.604813
Target:  5'- gGCGuCCUcgacgggAUCGgGGCcGaGGCCGGCGGCg -3'
miRNA:   3'- -UGC-GGA-------UGGCgCCGcC-CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 103348 0.67 0.603876
Target:  5'- gGCGUCgacgaguccgggGCCGCGGUcGGGUCGucCGACc -3'
miRNA:   3'- -UGCGGa-----------UGGCGCCGcCCCGGCu-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 100788 0.67 0.600132
Target:  5'- cCGCCcGCCGCGacgccgcccguccuCGGGGUCGACcugGACg -3'
miRNA:   3'- uGCGGaUGGCGCc-------------GCCCCGGCUG---CUG- -5'
8949 3' -64.4 NC_002512.2 + 24218 0.67 0.59639
Target:  5'- gACGCCggaGCUGUccgaGGCgucGGGcccGCCGACGGCg -3'
miRNA:   3'- -UGCGGa--UGGCG----CCG---CCC---CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 71020 0.67 0.59639
Target:  5'- -gGCC-GCCGcCGGCc-GGUCGACGACg -3'
miRNA:   3'- ugCGGaUGGC-GCCGccCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 126339 0.67 0.59639
Target:  5'- cCGCUUuCgGCuGGUGGagacGGCCGGCGGCa -3'
miRNA:   3'- uGCGGAuGgCG-CCGCC----CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 46989 0.67 0.59639
Target:  5'- cGCGCCcGCCGaga-GGGGCCGcuucuugcugGCGGCg -3'
miRNA:   3'- -UGCGGaUGGCgccgCCCCGGC----------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 63445 0.67 0.59639
Target:  5'- gGCGCCgucGCCcccggaggaCGGCGGGGaaGAgGGCa -3'
miRNA:   3'- -UGCGGa--UGGc--------GCCGCCCCggCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 5754 0.67 0.59639
Target:  5'- cCGCCU-CC-CGGCGcGGGUCcACGGCc -3'
miRNA:   3'- uGCGGAuGGcGCCGC-CCCGGcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 91862 0.67 0.59639
Target:  5'- cAUGCCcccgagGCCGCcguccGGCGcGGGC-GGCGGCg -3'
miRNA:   3'- -UGCGGa-----UGGCG-----CCGC-CCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 97079 0.67 0.59639
Target:  5'- uGCGgaUCUucuuCCGgaaggaCGGCGGGGgCGACGGCa -3'
miRNA:   3'- -UGC--GGAu---GGC------GCCGCCCCgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 199978 0.67 0.59639
Target:  5'- cCGCCgcguCCGCgcgcccGGCGGGGaCGAgCGGCc -3'
miRNA:   3'- uGCGGau--GGCG------CCGCCCCgGCU-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 210041 0.67 0.59639
Target:  5'- cGCGCCUuCCGCucCGGGGaCGuCGACc -3'
miRNA:   3'- -UGCGGAuGGCGccGCCCCgGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 128402 0.67 0.59639
Target:  5'- cCGUCUcgaGCCcgGUGGCGGGGUCGcCGGa -3'
miRNA:   3'- uGCGGA---UGG--CGCCGCCCCGGCuGCUg -5'
8949 3' -64.4 NC_002512.2 + 129496 0.67 0.59639
Target:  5'- gACGCuCU-CCGCGGCcgggaagucGGGaGCCgcguacagGACGACg -3'
miRNA:   3'- -UGCG-GAuGGCGCCG---------CCC-CGG--------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 120256 0.67 0.59639
Target:  5'- -gGCCUAcCCGCGGgacCGccGGCUGAUGACg -3'
miRNA:   3'- ugCGGAU-GGCGCC---GCc-CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 54248 0.67 0.587053
Target:  5'- cACGUCcGCaGCGGCaGGGC-GGCGGCg -3'
miRNA:   3'- -UGCGGaUGgCGCCGcCCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 96529 0.67 0.587053
Target:  5'- cGCGCCgGCgGUGugagcCGGGGCCGGgGAUc -3'
miRNA:   3'- -UGCGGaUGgCGCc----GCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 23329 0.67 0.587053
Target:  5'- gGCGCCccggGCCGcCGGCGGuGuaCGaguGCGGCg -3'
miRNA:   3'- -UGCGGa---UGGC-GCCGCC-CcgGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 149145 0.67 0.587053
Target:  5'- gAC-CCgggACCGCcGCGGGGCCGGUGcCg -3'
miRNA:   3'- -UGcGGa--UGGCGcCGCCCCGGCUGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.