Results 141 - 160 of 401 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8949 | 3' | -64.4 | NC_002512.2 | + | 222640 | 0.67 | 0.567539 |
Target: 5'- gACGCCgcuccGCCGCgacggccGGCcGGGCCGAgGGg -3' miRNA: 3'- -UGCGGa----UGGCG-------CCGcCCCGGCUgCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 128780 | 0.67 | 0.565689 |
Target: 5'- cACGCCgcGCCGCgcgcuGGcCGGGGUcuucagcgagagguCGGCGGCg -3' miRNA: 3'- -UGCGGa-UGGCG-----CC-GCCCCG--------------GCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 100047 | 0.68 | 0.562917 |
Target: 5'- cCGCCU-CCGCcuccaucgcgacgggGGcCGcGGGCCGGgGACg -3' miRNA: 3'- uGCGGAuGGCG---------------CC-GC-CCCGGCUgCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 227599 | 0.68 | 0.559226 |
Target: 5'- cCGCC-ACCcgcaGCGGCcggaGGGCgGGCGGCg -3' miRNA: 3'- uGCGGaUGG----CGCCGc---CCCGgCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 101415 | 0.68 | 0.559226 |
Target: 5'- cCGCUUccgagggcacaGCgGCGGcCGGcGGCgCGGCGACg -3' miRNA: 3'- uGCGGA-----------UGgCGCC-GCC-CCG-GCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 123137 | 0.68 | 0.559226 |
Target: 5'- -aGCCggaCGCGGagcgccgcCGGGGCCGAgGAg -3' miRNA: 3'- ugCGGaugGCGCC--------GCCCCGGCUgCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 148261 | 0.68 | 0.559226 |
Target: 5'- -aGCCUGgaCGUGGCGacggcccuGGCCGACGAg -3' miRNA: 3'- ugCGGAUg-GCGCCGCc-------CCGGCUGCUg -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 112124 | 0.68 | 0.559226 |
Target: 5'- gACGCCcucccgcaUGgCGCGGaagacgaGGcGGUCGACGGCg -3' miRNA: 3'- -UGCGG--------AUgGCGCCg------CC-CCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 9516 | 0.68 | 0.559226 |
Target: 5'- -gGCCccagcACgGCGGCGGcGGCC-ACGGCc -3' miRNA: 3'- ugCGGa----UGgCGCCGCC-CCGGcUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 229024 | 0.68 | 0.559226 |
Target: 5'- -gGUgUGCaGCGGUGGGGCUGAUaauGGCa -3' miRNA: 3'- ugCGgAUGgCGCCGCCCCGGCUG---CUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 48486 | 0.68 | 0.559226 |
Target: 5'- aACGCgUcCC-CGGCGGaGGCCagggcgcacGACGACg -3' miRNA: 3'- -UGCGgAuGGcGCCGCC-CCGG---------CUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 59836 | 0.68 | 0.559226 |
Target: 5'- -gGCC-GCgGCGGCGGcGGCC-AUGGCc -3' miRNA: 3'- ugCGGaUGgCGCCGCC-CCGGcUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 133667 | 0.68 | 0.559226 |
Target: 5'- cCGCCgccGCCGCGGCcgccGuGGCCGACcucGCg -3' miRNA: 3'- uGCGGa--UGGCGCCGc---C-CCGGCUGc--UG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 139268 | 0.68 | 0.559226 |
Target: 5'- cGCGCCgcCCgGCGcGCGGGGgCGAaggggGGCg -3' miRNA: 3'- -UGCGGauGG-CGC-CGCCCCgGCUg----CUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 26928 | 0.68 | 0.558304 |
Target: 5'- gGCGCCUgaaacugaccucuACCgGCGGCGGaGCCaGACccuGACg -3' miRNA: 3'- -UGCGGA-------------UGG-CGCCGCCcCGG-CUG---CUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 14476 | 0.68 | 0.558304 |
Target: 5'- gGCGCCcuuggGCCaggGCaGGgcgaacauggugcCGGGGCUGGCGACg -3' miRNA: 3'- -UGCGGa----UGG---CG-CC-------------GCCCCGGCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 96654 | 0.68 | 0.557383 |
Target: 5'- gGCGCC-GCCGCccucccguccucGCuGGGCgGACGACg -3' miRNA: 3'- -UGCGGaUGGCGc-----------CGcCCCGgCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 69115 | 0.68 | 0.550028 |
Target: 5'- uGCGCCggccCCGCuccGGgaccuccgugccCGGGGCCGGCGcCg -3' miRNA: 3'- -UGCGGau--GGCG---CC------------GCCCCGGCUGCuG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 153734 | 0.68 | 0.550028 |
Target: 5'- gGCGCUguCCGUGGgGGGGuggucgaauCgGACGACg -3' miRNA: 3'- -UGCGGauGGCGCCgCCCC---------GgCUGCUG- -5' |
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8949 | 3' | -64.4 | NC_002512.2 | + | 81914 | 0.68 | 0.550028 |
Target: 5'- uCGUgcGCCGUGGagGGGGaCGACGACg -3' miRNA: 3'- uGCGgaUGGCGCCg-CCCCgGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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