miRNA display CGI


Results 81 - 100 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 47443 0.69 0.487204
Target:  5'- cACGCCcGCa-CGGCGGaGGCCGA-GGCc -3'
miRNA:   3'- -UGCGGaUGgcGCCGCC-CCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 48486 0.68 0.559226
Target:  5'- aACGCgUcCC-CGGCGGaGGCCagggcgcacGACGACg -3'
miRNA:   3'- -UGCGgAuGGcGCCGCC-CCGG---------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 54248 0.67 0.587053
Target:  5'- cACGUCcGCaGCGGCaGGGC-GGCGGCg -3'
miRNA:   3'- -UGCGGaUGgCGCCGcCCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 56267 0.69 0.487204
Target:  5'- uCGCC-GCCGCGGCGGaGGCgcuccCGcuacuCGACa -3'
miRNA:   3'- uGCGGaUGGCGCCGCC-CCG-----GCu----GCUG- -5'
8949 3' -64.4 NC_002512.2 + 56558 0.68 0.549111
Target:  5'- gUGCCgggACCgaagaccccgcagGCGGCGuuGGaGCCGAUGACg -3'
miRNA:   3'- uGCGGa--UGG-------------CGCCGC--CC-CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 57863 0.68 0.522738
Target:  5'- gGCGCaUGCUGcCGGCcGGaCCGGCGACg -3'
miRNA:   3'- -UGCGgAUGGC-GCCGcCCcGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 59836 0.68 0.559226
Target:  5'- -gGCC-GCgGCGGCGGcGGCC-AUGGCc -3'
miRNA:   3'- ugCGGaUGgCGCCGCC-CCGGcUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 60742 0.72 0.316722
Target:  5'- cCGCg-ACCGCGGCGgccGGGCgGACGAg -3'
miRNA:   3'- uGCGgaUGGCGCCGC---CCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 63445 0.67 0.59639
Target:  5'- gGCGCCgucGCCcccggaggaCGGCGGGGaaGAgGGCa -3'
miRNA:   3'- -UGCGGa--UGGc--------GCCGCCCCggCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 65516 0.71 0.351253
Target:  5'- -gGCCUGCUGCuGGCGGcGGaaGAUGAUg -3'
miRNA:   3'- ugCGGAUGGCG-CCGCC-CCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 67961 0.75 0.21379
Target:  5'- cGCGCCgguucGCCGUGGCGuccgccggaggaGGGCCGGCG-Cg -3'
miRNA:   3'- -UGCGGa----UGGCGCCGC------------CCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 69115 0.68 0.550028
Target:  5'- uGCGCCggccCCGCuccGGgaccuccgugccCGGGGCCGGCGcCg -3'
miRNA:   3'- -UGCGGau--GGCG---CC------------GCCCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 70878 0.66 0.652679
Target:  5'- cCGCCcGgCGCGGacgcCGGGGCCGcCGcCu -3'
miRNA:   3'- uGCGGaUgGCGCC----GCCCCGGCuGCuG- -5'
8949 3' -64.4 NC_002512.2 + 71020 0.67 0.59639
Target:  5'- -gGCC-GCCGcCGGCc-GGUCGACGACg -3'
miRNA:   3'- ugCGGaUGGC-GCCGccCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 71579 0.81 0.091482
Target:  5'- cGCGCCggacgACCGCGGCcuugGGGGCCGGC-ACg -3'
miRNA:   3'- -UGCGGa----UGGCGCCG----CCCCGGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 72793 0.7 0.396099
Target:  5'- uCGCCgggacgggcCCGCcGUGGGcGCCGGCGACc -3'
miRNA:   3'- uGCGGau-------GGCGcCGCCC-CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 75276 0.7 0.411846
Target:  5'- gGCGgCgACgGCGGCGGcGGC-GGCGACg -3'
miRNA:   3'- -UGCgGaUGgCGCCGCC-CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 75537 0.72 0.310131
Target:  5'- cAC-CCUcgacGCCGUGGCGGaGGaCGACGACg -3'
miRNA:   3'- -UGcGGA----UGGCGCCGCC-CCgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 75560 0.74 0.244481
Target:  5'- -gGCUcGCCGgGGCGGGGCCGcCGcCg -3'
miRNA:   3'- ugCGGaUGGCgCCGCCCCGGCuGCuG- -5'
8949 3' -64.4 NC_002512.2 + 77086 0.66 0.633905
Target:  5'- cCGCCgucGCCGCGGaccuccgagaCGGaGGCCcGGCGGu -3'
miRNA:   3'- uGCGGa--UGGCGCC----------GCC-CCGG-CUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.