miRNA display CGI


Results 121 - 140 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 90647 0.76 0.190797
Target:  5'- gGCGCCgcgGCCGCGGUcucggagucGGcGGCCG-CGGCg -3'
miRNA:   3'- -UGCGGa--UGGCGCCG---------CC-CCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 90910 0.71 0.388372
Target:  5'- -gGCCggacuggcgGCCGCGaaCGGGGCCGGCG-Cg -3'
miRNA:   3'- ugCGGa--------UGGCGCc-GCCCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 90937 0.69 0.452853
Target:  5'- gGCGCg-ACCGgGGCGugcguGGGCgCGACGAUc -3'
miRNA:   3'- -UGCGgaUGGCgCCGC-----CCCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 91862 0.67 0.59639
Target:  5'- cAUGCCcccgagGCCGCcguccGGCGcGGGC-GGCGGCg -3'
miRNA:   3'- -UGCGGa-----UGGCG-----CCGC-CCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 91976 0.66 0.624513
Target:  5'- cACGuCCggaggGCCGCGucCGGGucucccgcgucGCCGGCGGCg -3'
miRNA:   3'- -UGC-GGa----UGGCGCc-GCCC-----------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 92112 0.68 0.540879
Target:  5'- aGCGCCgaccuccagACCGCGgacacgcuGCGGGcGCUG-CGGCg -3'
miRNA:   3'- -UGCGGa--------UGGCGC--------CGCCC-CGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 92538 0.7 0.411846
Target:  5'- uAC-CCgGCCGCGGCGGccgcGGC-GACGACg -3'
miRNA:   3'- -UGcGGaUGGCGCCGCC----CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 92573 0.74 0.244481
Target:  5'- gGCGCCgacGCCGCGGCcGGGaggGGCGGCg -3'
miRNA:   3'- -UGCGGa--UGGCGCCGcCCCgg-CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 92689 0.72 0.323419
Target:  5'- cGCGCCgcccACCG-GGCGGa-CCGACGACg -3'
miRNA:   3'- -UGCGGa---UGGCgCCGCCccGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 94029 0.66 0.662048
Target:  5'- gACGCUcgguuUCGCGGCGGaucucuucGGC-GACGACg -3'
miRNA:   3'- -UGCGGau---GGCGCCGCC--------CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 94219 0.66 0.670464
Target:  5'- aGCGCCgccuCCGaGGCcuGGGucgcgaucaggccGCCGGCGACc -3'
miRNA:   3'- -UGCGGau--GGCgCCG--CCC-------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 95107 0.66 0.624513
Target:  5'- -aGCUcGgCGaCGGCGGGcccGCCGACGAa -3'
miRNA:   3'- ugCGGaUgGC-GCCGCCC---CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 95252 0.67 0.614188
Target:  5'- gGCGuCCggaggGCCGCgcggcuccugaacGGCGGGGUCGGguucccguCGGCg -3'
miRNA:   3'- -UGC-GGa----UGGCG-------------CCGCCCCGGCU--------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 95554 0.66 0.662048
Target:  5'- -aGCUcgGCCGCGGCGaGuccgucggcgccGGCCccGGCGACg -3'
miRNA:   3'- ugCGGa-UGGCGCCGC-C------------CCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 95879 0.69 0.462171
Target:  5'- cGCGCCgaggaucucgaggucGCC-CGGcCGGGuGCCGACGAg -3'
miRNA:   3'- -UGCGGa--------------UGGcGCC-GCCC-CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 95946 0.66 0.662048
Target:  5'- cGCGCCcuCCgGCGG-GGGGCUGA-GGCc -3'
miRNA:   3'- -UGCGGauGG-CGCCgCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 96001 0.69 0.469868
Target:  5'- gGCGCCgcgACCGCcaGGCGGaacGCCccguacaggggGACGACg -3'
miRNA:   3'- -UGCGGa--UGGCG--CCGCCc--CGG-----------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 96221 0.75 0.218666
Target:  5'- cACGgCgGCCGCGGCGGcGGC-GGCGACc -3'
miRNA:   3'- -UGCgGaUGGCGCCGCC-CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 96304 0.74 0.261155
Target:  5'- cCGCC-GCCGCgGGCGGGccggucGCCGcACGACa -3'
miRNA:   3'- uGCGGaUGGCG-CCGCCC------CGGC-UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 96529 0.67 0.587053
Target:  5'- cGCGCCgGCgGUGugagcCGGGGCCGGgGAUc -3'
miRNA:   3'- -UGCGGaUGgCGCc----GCCCCGGCUgCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.