miRNA display CGI


Results 141 - 160 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 96654 0.68 0.557383
Target:  5'- gGCGCC-GCCGCccucccguccucGCuGGGCgGACGACg -3'
miRNA:   3'- -UGCGGaUGGCGc-----------CGcCCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 97079 0.67 0.59639
Target:  5'- uGCGgaUCUucuuCCGgaaggaCGGCGGGGgCGACGGCa -3'
miRNA:   3'- -UGC--GGAu---GGC------GCCGCCCCgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 97162 0.74 0.249939
Target:  5'- uGCGCCUGCgGCaGC-GGGCCGAgGAUc -3'
miRNA:   3'- -UGCGGAUGgCGcCGcCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 97197 0.72 0.323419
Target:  5'- gACGCCcguCUGCGGCGgcGGGCCgGGCGGg -3'
miRNA:   3'- -UGCGGau-GGCGCCGC--CCCGG-CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 97306 0.69 0.452853
Target:  5'- uCGCCgaaccccugGCCGCGcccgcCGGGGUCGAgGGCg -3'
miRNA:   3'- uGCGGa--------UGGCGCc----GCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 97356 0.77 0.149493
Target:  5'- gGCGCCgcccgcggagcggggACCGCGGCGgccggagacgggggcGGGCgCGACGACg -3'
miRNA:   3'- -UGCGGa--------------UGGCGCCGC---------------CCCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 98121 0.69 0.495985
Target:  5'- cCGCUUGCCGgGGCGcuGGUCGucGCGGCc -3'
miRNA:   3'- uGCGGAUGGCgCCGCc-CCGGC--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 98160 0.67 0.568465
Target:  5'- gGCGgUcGCCGCGGUcuggacGGGCgCGGCGACc -3'
miRNA:   3'- -UGCgGaUGGCGCCGc-----CCCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 98309 0.69 0.452853
Target:  5'- gACGUCUuucCCGaggGGCucGGGGCCGGgGACg -3'
miRNA:   3'- -UGCGGAu--GGCg--CCG--CCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 99312 0.66 0.643296
Target:  5'- cCGCCcGCuCGCGGCGGccuaCGACGAa -3'
miRNA:   3'- uGCGGaUG-GCGCCGCCccg-GCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 100047 0.68 0.562917
Target:  5'- cCGCCU-CCGCcuccaucgcgacgggGGcCGcGGGCCGGgGACg -3'
miRNA:   3'- uGCGGAuGGCG---------------CC-GC-CCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 100051 0.74 0.244481
Target:  5'- gGCGCUgagACgcggggGCGGCGGcGCCGACGACg -3'
miRNA:   3'- -UGCGGa--UGg-----CGCCGCCcCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 100134 0.74 0.244481
Target:  5'- cCGUCguggACgGCGGCGGaccGGUCGACGACa -3'
miRNA:   3'- uGCGGa---UGgCGCCGCC---CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 100330 0.67 0.568465
Target:  5'- gGCGCCU-CgGgacUGGCGGGcGCCGGCcACg -3'
miRNA:   3'- -UGCGGAuGgC---GCCGCCC-CGGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 100788 0.67 0.600132
Target:  5'- cCGCCcGCCGCGacgccgcccguccuCGGGGUCGACcugGACg -3'
miRNA:   3'- uGCGGaUGGCGCc-------------GCCCCGGCUG---CUG- -5'
8949 3' -64.4 NC_002512.2 + 101415 0.68 0.559226
Target:  5'- cCGCUUccgagggcacaGCgGCGGcCGGcGGCgCGGCGACg -3'
miRNA:   3'- uGCGGA-----------UGgCGCC-GCC-CCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 101655 0.69 0.495103
Target:  5'- aGCGCggcgGCCGCGGaCGccGGGCCGAucuacguCGGCg -3'
miRNA:   3'- -UGCGga--UGGCGCC-GC--CCCGGCU-------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 101837 0.69 0.478498
Target:  5'- gACGCCgcgACCGU--CGGGGCCGugcagcucuuCGACg -3'
miRNA:   3'- -UGCGGa--UGGCGccGCCCCGGCu---------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 101904 0.69 0.478498
Target:  5'- gACGCCgacggggGCgGCGuguucuccauGCGGGGaCCGACGGa -3'
miRNA:   3'- -UGCGGa------UGgCGC----------CGCCCC-GGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 102044 0.69 0.452853
Target:  5'- -aGCU--UCGCGGCGGacgccGCCGACGACc -3'
miRNA:   3'- ugCGGauGGCGCCGCCc----CGGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.