miRNA display CGI


Results 121 - 140 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 149220 0.71 0.388372
Target:  5'- uCGCC-GCCGCcGCGGGaCCGACGGa -3'
miRNA:   3'- uGCGGaUGGCGcCGCCCcGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 149145 0.67 0.587053
Target:  5'- gAC-CCgggACCGCcGCGGGGCCGGUGcCg -3'
miRNA:   3'- -UGcGGa--UGGCGcCGCCCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 148261 0.68 0.559226
Target:  5'- -aGCCUGgaCGUGGCGacggcccuGGCCGACGAg -3'
miRNA:   3'- ugCGGAUg-GCGCCGCc-------CCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 148076 0.66 0.643296
Target:  5'- cGCGCCgcggucguCCGUcccccGGCGGcGGC-GGCGGCg -3'
miRNA:   3'- -UGCGGau------GGCG-----CCGCC-CCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 147695 0.69 0.469868
Target:  5'- gACGCCgGCCGaCGGCGgacGGGCUcuCGACc -3'
miRNA:   3'- -UGCGGaUGGC-GCCGC---CCCGGcuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 147607 0.66 0.661112
Target:  5'- uCGCCUcgacccgACCcuCGaCGGGGgCGACGACg -3'
miRNA:   3'- uGCGGA-------UGGc-GCcGCCCCgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 147052 0.71 0.358472
Target:  5'- cGCGCggACCGgGGCGGGaacguGUgGGCGACg -3'
miRNA:   3'- -UGCGgaUGGCgCCGCCC-----CGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 146727 0.74 0.233863
Target:  5'- gGCGgCgGCCGCGGCcgccGGGcCCGACGACc -3'
miRNA:   3'- -UGCgGaUGGCGCCGc---CCC-GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 146092 0.66 0.671398
Target:  5'- cGCGCCcgaCGCGGUccucGGcGGCggCGGCGGCg -3'
miRNA:   3'- -UGCGGaugGCGCCG----CC-CCG--GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 144813 0.67 0.568465
Target:  5'- aACGCCUACgGgGGCcacgaGGGCaCGGCGcuGCu -3'
miRNA:   3'- -UGCGGAUGgCgCCGc----CCCG-GCUGC--UG- -5'
8949 3' -64.4 NC_002512.2 + 143561 0.72 0.323419
Target:  5'- cGCGUCUccCCGCGG-GcGGGCCGGCGGa -3'
miRNA:   3'- -UGCGGAu-GGCGCCgC-CCCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 142018 0.82 0.069887
Target:  5'- cCGUCUcuuCCGCGGCcgGGGGCCGGCGACc -3'
miRNA:   3'- uGCGGAu--GGCGCCG--CCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 141605 0.66 0.671398
Target:  5'- gACGCUgcagACCGUGGCGgucgauuucGGGgaGACGAa -3'
miRNA:   3'- -UGCGGa---UGGCGCCGC---------CCCggCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 141284 0.72 0.303645
Target:  5'- gACGCCgGCCGCgcgcacGGCGGcaCCGGCGGCg -3'
miRNA:   3'- -UGCGGaUGGCG------CCGCCccGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 139268 0.68 0.559226
Target:  5'- cGCGCCgcCCgGCGcGCGGGGgCGAaggggGGCg -3'
miRNA:   3'- -UGCGGauGG-CGC-CGCCCCgGCUg----CUG- -5'
8949 3' -64.4 NC_002512.2 + 138198 0.72 0.344138
Target:  5'- cGCGgacauCCUACCGU--CGGGGCCGACgGACg -3'
miRNA:   3'- -UGC-----GGAUGGCGccGCCCCGGCUG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 137309 0.68 0.522738
Target:  5'- cCGCCccucccgGCCGCGGCGucGGcGCCucCGACg -3'
miRNA:   3'- uGCGGa------UGGCGCCGC--CC-CGGcuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 136177 0.73 0.284813
Target:  5'- cCGCCg--CGCGGCGGGGUCGcCGGg -3'
miRNA:   3'- uGCGGaugGCGCCGCCCCGGCuGCUg -5'
8949 3' -64.4 NC_002512.2 + 136084 0.67 0.587053
Target:  5'- gGCGuuCCUGCUGCugcucgcgcuGGCGGcGGCCacaGCGACg -3'
miRNA:   3'- -UGC--GGAUGGCG----------CCGCC-CCGGc--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 135794 0.68 0.513755
Target:  5'- uCGCaucacgaCGCGGCGGGgacGCCGACGGu -3'
miRNA:   3'- uGCGgaug---GCGCCGCCC---CGGCUGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.