miRNA display CGI


Results 81 - 100 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 5167 0.72 0.337127
Target:  5'- gGCGCg-ACCGgGGCGGcGGCCGGCc-- -3'
miRNA:   3'- -UGCGgaUGGCgCCGCC-CCGGCUGcug -5'
8949 3' -64.4 NC_002512.2 + 131740 0.72 0.344138
Target:  5'- gGCGaCC-GCCGgGGCGGgcGGCCG-CGACg -3'
miRNA:   3'- -UGC-GGaUGGCgCCGCC--CCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 65516 0.71 0.351253
Target:  5'- -gGCCUGCUGCuGGCGGcGGaaGAUGAUg -3'
miRNA:   3'- ugCGGAUGGCG-CCGCC-CCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 108726 0.71 0.351253
Target:  5'- aACGCCUcgcccuggGCCGCGGcCGGcgucucGGCCGccguCGACg -3'
miRNA:   3'- -UGCGGA--------UGGCGCC-GCC------CCGGCu---GCUG- -5'
8949 3' -64.4 NC_002512.2 + 5302 0.71 0.354128
Target:  5'- cGCGcCCUgacguaacccggguaGCCGCGGUGGGGaUCGAUGGg -3'
miRNA:   3'- -UGC-GGA---------------UGGCGCCGCCCC-GGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 13562 0.71 0.358472
Target:  5'- cCGCCgACCGCGuCGGGGCCG-CaGAUg -3'
miRNA:   3'- uGCGGaUGGCGCcGCCCCGGCuG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 4598 0.71 0.358472
Target:  5'- gGCGCCgcggGCCGCGaGaCGGacGCCGAgGACg -3'
miRNA:   3'- -UGCGGa---UGGCGC-C-GCCc-CGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 11666 0.72 0.323419
Target:  5'- gGCGCCgcggcccGCCGCGGCccgaggcgGGGGCCcgaggGGCGAg -3'
miRNA:   3'- -UGCGGa------UGGCGCCG--------CCCCGG-----CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 133916 0.72 0.323419
Target:  5'- -gGCCUACCuccugcuguaCGGCGGcGGcCCGACGGCc -3'
miRNA:   3'- ugCGGAUGGc---------GCCGCC-CC-GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 97197 0.72 0.323419
Target:  5'- gACGCCcguCUGCGGCGgcGGGCCgGGCGGg -3'
miRNA:   3'- -UGCGGau-GGCGCCGC--CCCGG-CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 128188 0.74 0.261155
Target:  5'- uCGCCgagcggGCCGcCGGCGGGaCCGGgGACg -3'
miRNA:   3'- uGCGGa-----UGGC-GCCGCCCcGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 102152 0.73 0.266916
Target:  5'- -gGCCgcgACCGCGGCuGGGUCGuCGAUc -3'
miRNA:   3'- ugCGGa--UGGCGCCGcCCCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 38930 0.73 0.266916
Target:  5'- -gGCC-GCCGCGGCGGGcGCCcGCGuGCg -3'
miRNA:   3'- ugCGGaUGGCGCCGCCC-CGGcUGC-UG- -5'
8949 3' -64.4 NC_002512.2 + 42578 0.73 0.266916
Target:  5'- gGCGCCgcgagGCgaGCGGCGGGGCgGACc-- -3'
miRNA:   3'- -UGCGGa----UGg-CGCCGCCCCGgCUGcug -5'
8949 3' -64.4 NC_002512.2 + 39690 0.73 0.281159
Target:  5'- cGCGCCgccgaccuucugcaGCCGgGGCGagcggaucGGGUCGACGACg -3'
miRNA:   3'- -UGCGGa-------------UGGCgCCGC--------CCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 136177 0.73 0.284813
Target:  5'- cCGCCg--CGCGGCGGGGUCGcCGGg -3'
miRNA:   3'- uGCGGaugGCGCCGCCCCGGCuGCUg -5'
8949 3' -64.4 NC_002512.2 + 88972 0.72 0.303645
Target:  5'- uGCGUCUGggucuccggcuUCGUGGCcggGGGGCCGACGGa -3'
miRNA:   3'- -UGCGGAU-----------GGCGCCG---CCCCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 121826 0.72 0.308174
Target:  5'- uCGCCgucgGCCGgacgggggggaggaCGGCGGGGaggaCGGCGGCg -3'
miRNA:   3'- uGCGGa---UGGC--------------GCCGCCCCg---GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 60742 0.72 0.316722
Target:  5'- cCGCg-ACCGCGGCGgccGGGCgGACGAg -3'
miRNA:   3'- uGCGgaUGGCGCCGC---CCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 34910 0.71 0.368011
Target:  5'- uGCGCCgagaggaggacgagaCGaCGGCGGGGUCGcgGCGACg -3'
miRNA:   3'- -UGCGGaug------------GC-GCCGCCCCGGC--UGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.