miRNA display CGI


Results 101 - 120 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 103457 0.71 0.383784
Target:  5'- uCGCCgGCCG-GGCGGGaggaggagaggcggcGUCGACGGCg -3'
miRNA:   3'- uGCGGaUGGCgCCGCCC---------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 15639 0.71 0.388372
Target:  5'- aACuCCUcgGCCGCgGGCGGcGaGCCGACGAg -3'
miRNA:   3'- -UGcGGA--UGGCG-CCGCC-C-CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 8449 0.71 0.388372
Target:  5'- cGCGCCccgGCCGCGGUccgcauGGcGGCCGuCgGACa -3'
miRNA:   3'- -UGCGGa--UGGCGCCG------CC-CCGGCuG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 90910 0.71 0.388372
Target:  5'- -gGCCggacuggcgGCCGCGaaCGGGGCCGGCG-Cg -3'
miRNA:   3'- ugCGGa--------UGGCGCc-GCCCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 110263 0.71 0.388372
Target:  5'- aGCGCCgcGCUGgGGCGGGaGgCGAgCGGCg -3'
miRNA:   3'- -UGCGGa-UGGCgCCGCCC-CgGCU-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 108726 0.71 0.351253
Target:  5'- aACGCCUcgcccuggGCCGCGGcCGGcgucucGGCCGccguCGACg -3'
miRNA:   3'- -UGCGGA--------UGGCGCC-GCC------CCGGCu---GCUG- -5'
8949 3' -64.4 NC_002512.2 + 65516 0.71 0.351253
Target:  5'- -gGCCUGCUGCuGGCGGcGGaaGAUGAUg -3'
miRNA:   3'- ugCGGAUGGCG-CCGCC-CCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 39690 0.73 0.281159
Target:  5'- cGCGCCgccgaccuucugcaGCCGgGGCGagcggaucGGGUCGACGACg -3'
miRNA:   3'- -UGCGGa-------------UGGCgCCGC--------CCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 136177 0.73 0.284813
Target:  5'- cCGCCg--CGCGGCGGGGUCGcCGGg -3'
miRNA:   3'- uGCGGaugGCGCCGCCCCGGCuGCUg -5'
8949 3' -64.4 NC_002512.2 + 88972 0.72 0.303645
Target:  5'- uGCGUCUGggucuccggcuUCGUGGCcggGGGGCCGACGGa -3'
miRNA:   3'- -UGCGGAU-----------GGCGCCG---CCCCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 121826 0.72 0.308174
Target:  5'- uCGCCgucgGCCGgacgggggggaggaCGGCGGGGaggaCGGCGGCg -3'
miRNA:   3'- uGCGGa---UGGC--------------GCCGCCCCg---GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 60742 0.72 0.316722
Target:  5'- cCGCg-ACCGCGGCGgccGGGCgGACGAg -3'
miRNA:   3'- uGCGgaUGGCGCCGC---CCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 97197 0.72 0.323419
Target:  5'- gACGCCcguCUGCGGCGgcGGGCCgGGCGGg -3'
miRNA:   3'- -UGCGGau-GGCGCCGC--CCCGG-CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 133916 0.72 0.323419
Target:  5'- -gGCCUACCuccugcuguaCGGCGGcGGcCCGACGGCc -3'
miRNA:   3'- ugCGGAUGGc---------GCCGCC-CC-GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 11666 0.72 0.323419
Target:  5'- gGCGCCgcggcccGCCGCGGCccgaggcgGGGGCCcgaggGGCGAg -3'
miRNA:   3'- -UGCGGa------UGGCGCCG--------CCCCGG-----CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 22969 0.72 0.33022
Target:  5'- -aGCCguucaucacCCGCGGCGGGacGCgGGCGGCg -3'
miRNA:   3'- ugCGGau-------GGCGCCGCCC--CGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 116886 0.72 0.33022
Target:  5'- cGCGgCUG--GCGGCGGGGCCGG-GGCg -3'
miRNA:   3'- -UGCgGAUggCGCCGCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 134106 0.72 0.334352
Target:  5'- gGCGCCUACCGCucGGacgcccccguccaGGcGGCCGucGCGGCg -3'
miRNA:   3'- -UGCGGAUGGCG--CCg------------CC-CCGGC--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 5167 0.72 0.337127
Target:  5'- gGCGCg-ACCGgGGCGGcGGCCGGCc-- -3'
miRNA:   3'- -UGCGgaUGGCgCCGCC-CCGGCUGcug -5'
8949 3' -64.4 NC_002512.2 + 131740 0.72 0.344138
Target:  5'- gGCGaCC-GCCGgGGCGGgcGGCCG-CGACg -3'
miRNA:   3'- -UGC-GGaUGGCgCCGCC--CCGGCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.