miRNA display CGI


Results 121 - 140 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 122041 0.7 0.411846
Target:  5'- cGCGCaCgcCCGgGGCGGcGUCGGCGGCu -3'
miRNA:   3'- -UGCG-GauGGCgCCGCCcCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 18141 0.7 0.411846
Target:  5'- aGCGCCcggGCCGCGucGCGGGccagGCCGA-GGCa -3'
miRNA:   3'- -UGCGGa--UGGCGC--CGCCC----CGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 29094 0.71 0.380745
Target:  5'- cCGCCUcgucuuCgGCGGCGGcGGCCauGGCGAUg -3'
miRNA:   3'- uGCGGAu-----GgCGCCGCC-CCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 120778 0.71 0.380745
Target:  5'- uCGgCgGCCGuCGGCGGGGgCGGCGGg -3'
miRNA:   3'- uGCgGaUGGC-GCCGCCCCgGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 7359 0.71 0.373219
Target:  5'- -gGCCcACCGCGaCGGcGGCCG-CGGCg -3'
miRNA:   3'- ugCGGaUGGCGCcGCC-CCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 133916 0.72 0.323419
Target:  5'- -gGCCUACCuccugcuguaCGGCGGcGGcCCGACGGCc -3'
miRNA:   3'- ugCGGAUGGc---------GCCGCC-CC-GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 11666 0.72 0.323419
Target:  5'- gGCGCCgcggcccGCCGCGGCccgaggcgGGGGCCcgaggGGCGAg -3'
miRNA:   3'- -UGCGGa------UGGCGCCG--------CCCCGG-----CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 22969 0.72 0.33022
Target:  5'- -aGCCguucaucacCCGCGGCGGGacGCgGGCGGCg -3'
miRNA:   3'- ugCGGau-------GGCGCCGCCC--CGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 116886 0.72 0.33022
Target:  5'- cGCGgCUG--GCGGCGGGGCCGG-GGCg -3'
miRNA:   3'- -UGCgGAUggCGCCGCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 134106 0.72 0.334352
Target:  5'- gGCGCCUACCGCucGGacgcccccguccaGGcGGCCGucGCGGCg -3'
miRNA:   3'- -UGCGGAUGGCG--CCg------------CC-CCGGC--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 5167 0.72 0.337127
Target:  5'- gGCGCg-ACCGgGGCGGcGGCCGGCc-- -3'
miRNA:   3'- -UGCGgaUGGCgCCGCC-CCGGCUGcug -5'
8949 3' -64.4 NC_002512.2 + 131740 0.72 0.344138
Target:  5'- gGCGaCC-GCCGgGGCGGgcGGCCG-CGACg -3'
miRNA:   3'- -UGC-GGaUGGCgCCGCC--CCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 106454 0.7 0.411846
Target:  5'- aACGCCUgucgggggAUCGCgaacacgaacggGGCcaGGGCCGACGGCa -3'
miRNA:   3'- -UGCGGA--------UGGCG------------CCGc-CCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 65516 0.71 0.351253
Target:  5'- -gGCCUGCUGCuGGCGGcGGaaGAUGAUg -3'
miRNA:   3'- ugCGGAUGGCG-CCGCC-CCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 108726 0.71 0.351253
Target:  5'- aACGCCUcgcccuggGCCGCGGcCGGcgucucGGCCGccguCGACg -3'
miRNA:   3'- -UGCGGA--------UGGCGCC-GCC------CCGGCu---GCUG- -5'
8949 3' -64.4 NC_002512.2 + 5302 0.71 0.354128
Target:  5'- cGCGcCCUgacguaacccggguaGCCGCGGUGGGGaUCGAUGGg -3'
miRNA:   3'- -UGC-GGA---------------UGGCGCCGCCCC-GGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 13562 0.71 0.358472
Target:  5'- cCGCCgACCGCGuCGGGGCCG-CaGAUg -3'
miRNA:   3'- uGCGGaUGGCGCcGCCCCGGCuG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 4598 0.71 0.358472
Target:  5'- gGCGCCgcggGCCGCGaGaCGGacGCCGAgGACg -3'
miRNA:   3'- -UGCGGa---UGGCGC-C-GCCc-CGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 34910 0.71 0.368011
Target:  5'- uGCGCCgagaggaggacgagaCGaCGGCGGGGUCGcgGCGACg -3'
miRNA:   3'- -UGCGGaug------------GC-GCCGCCCCGGC--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 82210 0.71 0.372472
Target:  5'- gGCGuCCUcCCGgGGCgggaagcGGGGCCGGUGACg -3'
miRNA:   3'- -UGC-GGAuGGCgCCG-------CCCCGGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.