miRNA display CGI


Results 141 - 160 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 79144 0.7 0.396099
Target:  5'- -gGUCUggGCCGC-GCGcGGGCCGACGGg -3'
miRNA:   3'- ugCGGA--UGGCGcCGC-CCCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 4912 0.7 0.395322
Target:  5'- gGCGCCgccgccGCCGCccagcggguagacGGCGGaGCCGAgCGACa -3'
miRNA:   3'- -UGCGGa-----UGGCG-------------CCGCCcCGGCU-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 4598 0.71 0.358472
Target:  5'- gGCGCCgcggGCCGCGaGaCGGacGCCGAgGACg -3'
miRNA:   3'- -UGCGGa---UGGCGC-C-GCCc-CGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 13562 0.71 0.358472
Target:  5'- cCGCCgACCGCGuCGGGGCCG-CaGAUg -3'
miRNA:   3'- uGCGGaUGGCGCcGCCCCGGCuG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 5302 0.71 0.354128
Target:  5'- cGCGcCCUgacguaacccggguaGCCGCGGUGGGGaUCGAUGGg -3'
miRNA:   3'- -UGC-GGA---------------UGGCGCCGCCCC-GGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 108726 0.71 0.351253
Target:  5'- aACGCCUcgcccuggGCCGCGGcCGGcgucucGGCCGccguCGACg -3'
miRNA:   3'- -UGCGGA--------UGGCGCC-GCC------CCGGCu---GCUG- -5'
8949 3' -64.4 NC_002512.2 + 65516 0.71 0.351253
Target:  5'- -gGCCUGCUGCuGGCGGcGGaaGAUGAUg -3'
miRNA:   3'- ugCGGAUGGCG-CCGCC-CCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 131740 0.72 0.344138
Target:  5'- gGCGaCC-GCCGgGGCGGgcGGCCG-CGACg -3'
miRNA:   3'- -UGC-GGaUGGCgCCGCC--CCGGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 5167 0.72 0.337127
Target:  5'- gGCGCg-ACCGgGGCGGcGGCCGGCc-- -3'
miRNA:   3'- -UGCGgaUGGCgCCGCC-CCGGCUGcug -5'
8949 3' -64.4 NC_002512.2 + 134106 0.72 0.334352
Target:  5'- gGCGCCUACCGCucGGacgcccccguccaGGcGGCCGucGCGGCg -3'
miRNA:   3'- -UGCGGAUGGCG--CCg------------CC-CCGGC--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 34910 0.71 0.368011
Target:  5'- uGCGCCgagaggaggacgagaCGaCGGCGGGGUCGcgGCGACg -3'
miRNA:   3'- -UGCGGaug------------GC-GCCGCCCCGGC--UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 82210 0.71 0.372472
Target:  5'- gGCGuCCUcCCGgGGCgggaagcGGGGCCGGUGACg -3'
miRNA:   3'- -UGC-GGAuGGCgCCG-------CCCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 110263 0.71 0.388372
Target:  5'- aGCGCCgcGCUGgGGCGGGaGgCGAgCGGCg -3'
miRNA:   3'- -UGCGGa-UGGCgCCGCCC-CgGCU-GCUG- -5'
8949 3' -64.4 NC_002512.2 + 90910 0.71 0.388372
Target:  5'- -gGCCggacuggcgGCCGCGaaCGGGGCCGGCG-Cg -3'
miRNA:   3'- ugCGGa--------UGGCGCc-GCCCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 8449 0.71 0.388372
Target:  5'- cGCGCCccgGCCGCGGUccgcauGGcGGCCGuCgGACa -3'
miRNA:   3'- -UGCGGa--UGGCGCCG------CC-CCGGCuG-CUG- -5'
8949 3' -64.4 NC_002512.2 + 15639 0.71 0.388372
Target:  5'- aACuCCUcgGCCGCgGGCGGcGaGCCGACGAg -3'
miRNA:   3'- -UGcGGA--UGGCG-CCGCC-C-CGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 103457 0.71 0.383784
Target:  5'- uCGCCgGCCG-GGCGGGaggaggagaggcggcGUCGACGGCg -3'
miRNA:   3'- uGCGGaUGGCgCCGCCC---------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 29094 0.71 0.380745
Target:  5'- cCGCCUcgucuuCgGCGGCGGcGGCCauGGCGAUg -3'
miRNA:   3'- uGCGGAu-----GgCGCCGCC-CCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 120778 0.71 0.380745
Target:  5'- uCGgCgGCCGuCGGCGGGGgCGGCGGg -3'
miRNA:   3'- uGCgGaUGGC-GCCGCCCCgGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 7359 0.71 0.373219
Target:  5'- -gGCCcACCGCGaCGGcGGCCG-CGGCg -3'
miRNA:   3'- ugCGGaUGGCGCcGCC-CCGGCuGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.