miRNA display CGI


Results 101 - 120 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 77956 0.68 0.530873
Target:  5'- uCGCgaGCCG-GGUucgucucGGGGaCCGACGACg -3'
miRNA:   3'- uGCGgaUGGCgCCG-------CCCC-GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 209773 0.68 0.513755
Target:  5'- cGCGUCUuucggcaaGCC-CGGCGGcuacuucauGGUCGGCGACg -3'
miRNA:   3'- -UGCGGA--------UGGcGCCGCC---------CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 157085 0.68 0.513755
Target:  5'- uCGCCggcGCCcaCGGCGGGcccgucCCGGCGACg -3'
miRNA:   3'- uGCGGa--UGGc-GCCGCCCc-----GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 200792 0.68 0.504836
Target:  5'- cCGCC-GCCGCcgaagacgaGGCGGGaCgCGACGGCa -3'
miRNA:   3'- uGCGGaUGGCG---------CCGCCCcG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 201326 0.69 0.495985
Target:  5'- cCGUCUGCCGCGacgucaGCGuGGCCGACaucgGGCg -3'
miRNA:   3'- uGCGGAUGGCGC------CGCcCCGGCUG----CUG- -5'
8949 3' -64.4 NC_002512.2 + 149145 0.67 0.587053
Target:  5'- gAC-CCgggACCGCcGCGGGGCCGGUGcCg -3'
miRNA:   3'- -UGcGGa--UGGCGcCGCCCCGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 129496 0.67 0.59639
Target:  5'- gACGCuCU-CCGCGGCcgggaagucGGGaGCCgcguacagGACGACg -3'
miRNA:   3'- -UGCG-GAuGGCGCCG---------CCC-CGG--------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 94219 0.66 0.670464
Target:  5'- aGCGCCgccuCCGaGGCcuGGGucgcgaucaggccGCCGGCGACc -3'
miRNA:   3'- -UGCGGau--GGCgCCG--CCC-------------CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 95554 0.66 0.662048
Target:  5'- -aGCUcgGCCGCGGCGaGuccgucggcgccGGCCccGGCGACg -3'
miRNA:   3'- ugCGGa-UGGCGCCGC-C------------CCGG--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 199321 0.66 0.652679
Target:  5'- cGCGCUUACCGUuguaGuaGuGGGCCGcgcccACGGCg -3'
miRNA:   3'- -UGCGGAUGGCG----CcgC-CCCGGC-----UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 161601 0.66 0.652679
Target:  5'- aACGaCCUGCagaaaGCGGUGuGGGCCcACGuCc -3'
miRNA:   3'- -UGC-GGAUGg----CGCCGC-CCCGGcUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 214315 0.66 0.643296
Target:  5'- -gGCgUGCCGCacgaGCa-GGCCGACGACu -3'
miRNA:   3'- ugCGgAUGGCGc---CGccCCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 77086 0.66 0.633905
Target:  5'- cCGCCgucGCCGCGGaccuccgagaCGGaGGCCcGGCGGu -3'
miRNA:   3'- uGCGGa--UGGCGCC----------GCC-CCGG-CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 174404 0.66 0.633905
Target:  5'- gGCGCgUucCCGCGGCgccGGGGCCucCGuCg -3'
miRNA:   3'- -UGCGgAu-GGCGCCG---CCCCGGcuGCuG- -5'
8949 3' -64.4 NC_002512.2 + 129845 0.66 0.632966
Target:  5'- cGCGUCUcagcGCC-CGGCGGaggagccccuugaGGCCGcacGCGACg -3'
miRNA:   3'- -UGCGGA----UGGcGCCGCC-------------CCGGC---UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 224679 0.67 0.61888
Target:  5'- cCGCCgucggcuggcCCGCGGUccugcccgcccugcuGGGGCCGGCcGCc -3'
miRNA:   3'- uGCGGau--------GGCGCCG---------------CCCCGGCUGcUG- -5'
8949 3' -64.4 NC_002512.2 + 186423 0.67 0.615126
Target:  5'- cACGCCgUGCuCGgcCGGCuGGGCCuccuguacaccGACGACg -3'
miRNA:   3'- -UGCGG-AUG-GC--GCCGcCCCGG-----------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 202006 0.67 0.612312
Target:  5'- uCGUCUcggACagGUGGCGGGGCCGGgucccccgccggucCGGCu -3'
miRNA:   3'- uGCGGA---UGg-CGCCGCCCCGGCU--------------GCUG- -5'
8949 3' -64.4 NC_002512.2 + 192562 0.67 0.60575
Target:  5'- aGCGCgU-CCGUGGcCGGGGCCu-CGGa -3'
miRNA:   3'- -UGCGgAuGGCGCC-GCCCCGGcuGCUg -5'
8949 3' -64.4 NC_002512.2 + 91862 0.67 0.59639
Target:  5'- cAUGCCcccgagGCCGCcguccGGCGcGGGC-GGCGGCg -3'
miRNA:   3'- -UGCGGa-----UGGCG-----CCGC-CCCGgCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.