miRNA display CGI


Results 121 - 140 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 192894 0.66 0.643296
Target:  5'- aGCGCCgucgcgcuCCGCGGCGGuccagaGCCGccucCGAUg -3'
miRNA:   3'- -UGCGGau------GGCGCCGCCc-----CGGCu---GCUG- -5'
8949 3' -64.4 NC_002512.2 + 226293 0.66 0.633905
Target:  5'- uGCGCCUGuccccgagacccCCGgGGCcuguGGGCCGugG-Cu -3'
miRNA:   3'- -UGCGGAU------------GGCgCCGc---CCCGGCugCuG- -5'
8949 3' -64.4 NC_002512.2 + 220857 0.68 0.51286
Target:  5'- cGCGUCUAcgucguCCGCGGggccuCGGcgcucuccaucguGGCCGACGACc -3'
miRNA:   3'- -UGCGGAU------GGCGCC-----GCC-------------CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 192807 0.68 0.513755
Target:  5'- aACGCCacCCGgGGCgaucgcaccGGGGCCagGugGACg -3'
miRNA:   3'- -UGCGGauGGCgCCG---------CCCCGG--CugCUG- -5'
8949 3' -64.4 NC_002512.2 + 153168 0.68 0.519137
Target:  5'- gGCGaCCUACggggcggcgggcaGCGGUGGGGagGGCGGCa -3'
miRNA:   3'- -UGC-GGAUGg------------CGCCGCCCCggCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 159014 0.67 0.615126
Target:  5'- gGCGUCcgcGCCG-GGCGGa-CCGACGACu -3'
miRNA:   3'- -UGCGGa--UGGCgCCGCCccGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 186703 0.67 0.615126
Target:  5'- -gGCCUucguCUGCGGCGGGuUgGGCGAg -3'
miRNA:   3'- ugCGGAu---GGCGCCGCCCcGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 157701 0.67 0.609499
Target:  5'- cGCGCCUucGCCuCGGCGGGcugcuacgugaagaaGUCGGCGuCc -3'
miRNA:   3'- -UGCGGA--UGGcGCCGCCC---------------CGGCUGCuG- -5'
8949 3' -64.4 NC_002512.2 + 100788 0.67 0.600132
Target:  5'- cCGCCcGCCGCGacgccgcccguccuCGGGGUCGACcugGACg -3'
miRNA:   3'- uGCGGaUGGCGCc-------------GCCCCGGCUG---CUG- -5'
8949 3' -64.4 NC_002512.2 + 210041 0.67 0.59639
Target:  5'- cGCGCCUuCCGCucCGGGGaCGuCGACc -3'
miRNA:   3'- -UGCGGAuGGCGccGCCCCgGCuGCUG- -5'
8949 3' -64.4 NC_002512.2 + 97079 0.67 0.59639
Target:  5'- uGCGgaUCUucuuCCGgaaggaCGGCGGGGgCGACGGCa -3'
miRNA:   3'- -UGC--GGAu---GGC------GCCGCCCCgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 4659 0.67 0.587053
Target:  5'- cGCGCUaACgGCGGCGuuGGGCCuGuuGGCg -3'
miRNA:   3'- -UGCGGaUGgCGCCGC--CCCGG-CugCUG- -5'
8949 3' -64.4 NC_002512.2 + 198154 0.67 0.577743
Target:  5'- cGCGCggGCCGgguCGGCGccGGCCGGCGGa -3'
miRNA:   3'- -UGCGgaUGGC---GCCGCc-CCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 98160 0.67 0.568465
Target:  5'- gGCGgUcGCCGCGGUcuggacGGGCgCGGCGACc -3'
miRNA:   3'- -UGCgGaUGGCGCCGc-----CCCG-GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 222640 0.67 0.567539
Target:  5'- gACGCCgcuccGCCGCgacggccGGCcGGGCCGAgGGg -3'
miRNA:   3'- -UGCGGa----UGGCG-------CCGcCCCGGCUgCUg -5'
8949 3' -64.4 NC_002512.2 + 227599 0.68 0.559226
Target:  5'- cCGCC-ACCcgcaGCGGCcggaGGGCgGGCGGCg -3'
miRNA:   3'- uGCGGaUGG----CGCCGc---CCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 190418 0.68 0.550028
Target:  5'- uCGCCggggGCUGCGGgaGcGGGCCGucacCGACc -3'
miRNA:   3'- uGCGGa---UGGCGCCg-C-CCCGGCu---GCUG- -5'
8949 3' -64.4 NC_002512.2 + 201720 0.68 0.540879
Target:  5'- gGCGUCgucgUCGCGG-GGGGagaCGACGGCu -3'
miRNA:   3'- -UGCGGau--GGCGCCgCCCCg--GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 127387 0.68 0.53178
Target:  5'- cGCGaCUcCCGCGGCGGGaacgacGCCGAgGGg -3'
miRNA:   3'- -UGCgGAuGGCGCCGCCC------CGGCUgCUg -5'
8949 3' -64.4 NC_002512.2 + 201837 0.68 0.530873
Target:  5'- gGCuCCUuCCGCGGCcggcagcucgccuGGGGCCugcgguccgagGACGGCg -3'
miRNA:   3'- -UGcGGAuGGCGCCG-------------CCCCGG-----------CUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.