miRNA display CGI


Results 141 - 160 of 401 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 149248 0.71 0.351253
Target:  5'- gGCGCCgccGCCGCGGacggccggaCGGGuaCGACGAg -3'
miRNA:   3'- -UGCGGa--UGGCGCC---------GCCCcgGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 221434 0.71 0.358472
Target:  5'- cCGCCaugcggACCGCGGcCGGGGCgCGGucgucCGACc -3'
miRNA:   3'- uGCGGa-----UGGCGCC-GCCCCG-GCU-----GCUG- -5'
8949 3' -64.4 NC_002512.2 + 227652 0.68 0.504836
Target:  5'- aGCGCCcggguCCggaggaagaGCGGCGGcgccGCCGGCGACc -3'
miRNA:   3'- -UGCGGau---GG---------CGCCGCCc---CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 157085 0.68 0.513755
Target:  5'- uCGCCggcGCCcaCGGCGGGcccgucCCGGCGACg -3'
miRNA:   3'- uGCGGa--UGGc-GCCGCCCc-----GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 219042 0.68 0.522738
Target:  5'- uACGUCgucgGCCGCGGCgcGGGGCUccccGCGGg -3'
miRNA:   3'- -UGCGGa---UGGCGCCG--CCCCGGc---UGCUg -5'
8949 3' -64.4 NC_002512.2 + 201837 0.68 0.530873
Target:  5'- gGCuCCUuCCGCGGCcggcagcucgccuGGGGCCugcgguccgagGACGGCg -3'
miRNA:   3'- -UGcGGAuGGCGCCG-------------CCCCGG-----------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 164249 0.68 0.540879
Target:  5'- uCGgC-GCCGUGGCGGGGgCCGuCGGg -3'
miRNA:   3'- uGCgGaUGGCGCCGCCCC-GGCuGCUg -5'
8949 3' -64.4 NC_002512.2 + 201720 0.68 0.540879
Target:  5'- gGCGUCgucgUCGCGG-GGGGagaCGACGGCu -3'
miRNA:   3'- -UGCGGau--GGCGCCgCCCCg--GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 96654 0.68 0.557383
Target:  5'- gGCGCC-GCCGCccucccguccucGCuGGGCgGACGACg -3'
miRNA:   3'- -UGCGGaUGGCGc-----------CGcCCCGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 112124 0.68 0.559226
Target:  5'- gACGCCcucccgcaUGgCGCGGaagacgaGGcGGUCGACGGCg -3'
miRNA:   3'- -UGCGG--------AUgGCGCCg------CC-CCGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 201326 0.69 0.495985
Target:  5'- cCGUCUGCCGCGacgucaGCGuGGCCGACaucgGGCg -3'
miRNA:   3'- uGCGGAUGGCGC------CGCcCCGGCUG----CUG- -5'
8949 3' -64.4 NC_002512.2 + 158918 0.69 0.495985
Target:  5'- -gGCCgaguacgGCUuCGGCGGGggcGCCGGCGGCc -3'
miRNA:   3'- ugCGGa------UGGcGCCGCCC---CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 149220 0.71 0.388372
Target:  5'- uCGCC-GCCGCcGCGGGaCCGACGGa -3'
miRNA:   3'- uGCGGaUGGCGcCGCCCcGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 102904 0.7 0.41105
Target:  5'- uGCGCCUGgCGCGGuCGacggccacGGGCCccaggucguaacaGGCGACg -3'
miRNA:   3'- -UGCGGAUgGCGCC-GC--------CCCGG-------------CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 213547 0.7 0.411846
Target:  5'- aGCGUCUGCUGC-GCGGGGuCCGccuCGAg -3'
miRNA:   3'- -UGCGGAUGGCGcCGCCCC-GGCu--GCUg -5'
8949 3' -64.4 NC_002512.2 + 225482 0.7 0.427975
Target:  5'- cCGCCgucgACCGCGaucuaCGGGGCCGccGCGGg -3'
miRNA:   3'- uGCGGa---UGGCGCc----GCCCCGGC--UGCUg -5'
8949 3' -64.4 NC_002512.2 + 102477 0.69 0.452853
Target:  5'- cGCGCCcgUCGCGGUGGcGGUCccgcaGGCGGCg -3'
miRNA:   3'- -UGCGGauGGCGCCGCC-CCGG-----CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 158980 0.69 0.469868
Target:  5'- uCGgCgGCCaCGGCGGGGCggaGGCGGCg -3'
miRNA:   3'- uGCgGaUGGcGCCGCCCCGg--CUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 166460 0.69 0.469868
Target:  5'- gGCGCCggGCuCGagGGCGGGGaCGGCGGg -3'
miRNA:   3'- -UGCGGa-UG-GCg-CCGCCCCgGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 228569 0.69 0.478498
Target:  5'- gACGCUuccuUACCGCGGUcGuGUCGGCGGCa -3'
miRNA:   3'- -UGCGG----AUGGCGCCGcCcCGGCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.