miRNA display CGI


Results 61 - 80 of 401 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8949 3' -64.4 NC_002512.2 + 108426 0.73 0.297263
Target:  5'- uGCGCCgcCCGgGGCcgGGGGCCGGgGGg -3'
miRNA:   3'- -UGCGGauGGCgCCG--CCCCGGCUgCUg -5'
8949 3' -64.4 NC_002512.2 + 220301 0.73 0.297263
Target:  5'- cCGCCgaGCCGCcGgGGGGCCGGgGGCc -3'
miRNA:   3'- uGCGGa-UGGCGcCgCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 188647 0.73 0.297263
Target:  5'- gGCGCCgGCgGCGGCGGcGGcCCGucguccgaccGCGGCg -3'
miRNA:   3'- -UGCGGaUGgCGCCGCC-CC-GGC----------UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 165956 0.73 0.299803
Target:  5'- gACGCCggccgcuucaccaaGCUGCGGCGGGGCgGuCGGu -3'
miRNA:   3'- -UGCGGa-------------UGGCGCCGCCCCGgCuGCUg -5'
8949 3' -64.4 NC_002512.2 + 141284 0.72 0.303645
Target:  5'- gACGCCgGCCGCgcgcacGGCGGcaCCGGCGGCg -3'
miRNA:   3'- -UGCGGaUGGCG------CCGCCccGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 88972 0.72 0.303645
Target:  5'- uGCGUCUGggucuccggcuUCGUGGCcggGGGGCCGACGGa -3'
miRNA:   3'- -UGCGGAU-----------GGCGCCG---CCCCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 121826 0.72 0.308174
Target:  5'- uCGCCgucgGCCGgacgggggggaggaCGGCGGGGaggaCGGCGGCg -3'
miRNA:   3'- uGCGGa---UGGC--------------GCCGCCCCg---GCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 222512 0.72 0.310131
Target:  5'- uGCGCCUggccgcccGCCGCGGCcgccgucgcgGuGGGCCGggcuACGGCg -3'
miRNA:   3'- -UGCGGA--------UGGCGCCG----------C-CCCGGC----UGCUG- -5'
8949 3' -64.4 NC_002512.2 + 175254 0.72 0.310131
Target:  5'- uCGCCaggGCCGCgcucGGCGGGuaGCUGGCGGCc -3'
miRNA:   3'- uGCGGa--UGGCG----CCGCCC--CGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 75537 0.72 0.310131
Target:  5'- cAC-CCUcgacGCCGUGGCGGaGGaCGACGACg -3'
miRNA:   3'- -UGcGGA----UGGCGCCGCC-CCgGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 186339 0.72 0.316722
Target:  5'- gACGCCgucauCCGCGacaacgucuuCGGGGCCGGgGACg -3'
miRNA:   3'- -UGCGGau---GGCGCc---------GCCCCGGCUgCUG- -5'
8949 3' -64.4 NC_002512.2 + 60742 0.72 0.316722
Target:  5'- cCGCg-ACCGCGGCGgccGGGCgGACGAg -3'
miRNA:   3'- uGCGgaUGGCGCCGC---CCCGgCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 92689 0.72 0.323419
Target:  5'- cGCGCCgcccACCG-GGCGGa-CCGACGACg -3'
miRNA:   3'- -UGCGGa---UGGCgCCGCCccGGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 143561 0.72 0.323419
Target:  5'- cGCGUCUccCCGCGG-GcGGGCCGGCGGa -3'
miRNA:   3'- -UGCGGAu-GGCGCCgC-CCCGGCUGCUg -5'
8949 3' -64.4 NC_002512.2 + 97197 0.72 0.323419
Target:  5'- gACGCCcguCUGCGGCGgcGGGCCgGGCGGg -3'
miRNA:   3'- -UGCGGau-GGCGCCGC--CCCGG-CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 133916 0.72 0.323419
Target:  5'- -gGCCUACCuccugcuguaCGGCGGcGGcCCGACGGCc -3'
miRNA:   3'- ugCGGAUGGc---------GCCGCC-CC-GGCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 191029 0.72 0.323419
Target:  5'- gUGCCUGCga-GGCGGGGCgCGGCGcACg -3'
miRNA:   3'- uGCGGAUGgcgCCGCCCCG-GCUGC-UG- -5'
8949 3' -64.4 NC_002512.2 + 11666 0.72 0.323419
Target:  5'- gGCGCCgcggcccGCCGCGGCccgaggcgGGGGCCcgaggGGCGAg -3'
miRNA:   3'- -UGCGGa------UGGCGCCG--------CCCCGG-----CUGCUg -5'
8949 3' -64.4 NC_002512.2 + 22969 0.72 0.33022
Target:  5'- -aGCCguucaucacCCGCGGCGGGacGCgGGCGGCg -3'
miRNA:   3'- ugCGGau-------GGCGCCGCCC--CGgCUGCUG- -5'
8949 3' -64.4 NC_002512.2 + 182067 0.72 0.33022
Target:  5'- cGCGCCgaccucaGCCGCGGCuccGGGGUCugGGCGAa -3'
miRNA:   3'- -UGCGGa------UGGCGCCG---CCCCGG--CUGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.