Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8950 | 3' | -53.6 | NC_002512.2 | + | 10113 | 0.68 | 0.953295 |
Target: 5'- gGCCGGGCCgGCCGcGGgcaaAUAUGu- -3' miRNA: 3'- gUGGCCCGGgCGGC-CUaaa-UAUAUca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 11667 | 0.66 | 0.980312 |
Target: 5'- gCGCCGcGGCCCGCCGcGGc--------- -3' miRNA: 3'- -GUGGC-CCGGGCGGC-CUaaauauauca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 23334 | 0.66 | 0.980312 |
Target: 5'- -cCCGGG-CCGCCGGcggUGUAcgAGUg -3' miRNA: 3'- guGGCCCgGGCGGCCuaaAUAUa-UCA- -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 25177 | 0.66 | 0.985973 |
Target: 5'- -cCCGGGCCCGCCGu----------- -3' miRNA: 3'- guGGCCCGGGCGGCcuaaauauauca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 26321 | 0.66 | 0.986622 |
Target: 5'- uCGCUGGGCCUGUCGGuggcgag-GGa -3' miRNA: 3'- -GUGGCCCGGGCGGCCuaaauauaUCa -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 30653 | 0.67 | 0.967337 |
Target: 5'- aCAUCGGGCUgCGCCGGAUcUAc----- -3' miRNA: 3'- -GUGGCCCGG-GCGGCCUAaAUauauca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 32566 | 0.66 | 0.985973 |
Target: 5'- cCGCCGGGCgCCG-CGGGUgccgg-GGUc -3' miRNA: 3'- -GUGGCCCG-GGCgGCCUAaauauaUCA- -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 38331 | 0.72 | 0.82869 |
Target: 5'- gACCGGGaCCUGaCCGGAUUaGUGUGu- -3' miRNA: 3'- gUGGCCC-GGGC-GGCCUAAaUAUAUca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 41146 | 0.66 | 0.98899 |
Target: 5'- cCGCaCGGGCCCGgauaCGGAcaggUGUGUAc- -3' miRNA: 3'- -GUG-GCCCGGGCg---GCCUaa--AUAUAUca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 72755 | 0.66 | 0.98899 |
Target: 5'- -cCCGGGCCCGCCGc----------- -3' miRNA: 3'- guGGCCCGGGCGGCcuaaauauauca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 80658 | 0.68 | 0.964149 |
Target: 5'- gCGCCGGGUCCGUCGGu---------- -3' miRNA: 3'- -GUGGCCCGGGCGGCCuaaauauauca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 81218 | 0.68 | 0.957133 |
Target: 5'- gGCCacGGCCCGCUGGAUcgg-GUGGc -3' miRNA: 3'- gUGGc-CCGGGCGGCCUAaauaUAUCa -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 81295 | 0.68 | 0.957133 |
Target: 5'- -uCCGGGCCUGCgGGGUggGUuuguUGGc -3' miRNA: 3'- guGGCCCGGGCGgCCUAaaUAu---AUCa -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 92646 | 0.69 | 0.919996 |
Target: 5'- gCGCCGGGaCCCGCgCGGAUc-------- -3' miRNA: 3'- -GUGGCCC-GGGCG-GCCUAaauauauca -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 97319 | 0.69 | 0.925455 |
Target: 5'- gGCCGcGCCCGCCGGG---GUcgAGg -3' miRNA: 3'- gUGGCcCGGGCGGCCUaaaUAuaUCa -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 101967 | 0.68 | 0.948393 |
Target: 5'- --gCGGGCCCGCCGGcgggcucGUGGc -3' miRNA: 3'- gugGCCCGGGCGGCCuaaaua-UAUCa -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 104019 | 0.69 | 0.922208 |
Target: 5'- aGCCGuGCCCGCCGGAccagagggAGUa -3' miRNA: 3'- gUGGCcCGGGCGGCCUaaauaua-UCA- -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 104970 | 0.69 | 0.919996 |
Target: 5'- aCGCCGGGUCCGCCucGAg----GUAGg -3' miRNA: 3'- -GUGGCCCGGGCGGc-CUaaauaUAUCa -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 107209 | 0.66 | 0.983511 |
Target: 5'- aGCCGGGCCgCGgCCGGGgagccgcGGUc -3' miRNA: 3'- gUGGCCCGG-GC-GGCCUaaauauaUCA- -5' |
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8950 | 3' | -53.6 | NC_002512.2 | + | 108509 | 0.66 | 0.982361 |
Target: 5'- gGCCGGGCCCggcgcccgaccgGCCGGGg--------- -3' miRNA: 3'- gUGGCCCGGG------------CGGCCUaaauauauca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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