miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8950 5' -49.1 NC_002512.2 + 148335 0.66 0.999784
Target:  5'- ----cGUGAAcCCGcACGACCCGUa- -3'
miRNA:   3'- cuuuaUACUUaGGCcUGCUGGGCAgc -5'
8950 5' -49.1 NC_002512.2 + 164634 0.66 0.999784
Target:  5'- ------gGAGUCCGGACGGCaggcggCGaUCGg -3'
miRNA:   3'- cuuuauaCUUAGGCCUGCUGg-----GC-AGC- -5'
8950 5' -49.1 NC_002512.2 + 102350 0.66 0.999784
Target:  5'- ------cGggUCCGGGCG-UCgGUCGu -3'
miRNA:   3'- cuuuauaCuuAGGCCUGCuGGgCAGC- -5'
8950 5' -49.1 NC_002512.2 + 120131 0.66 0.999784
Target:  5'- ---cUAUGGAUCCaGAagaGACCCGagGa -3'
miRNA:   3'- cuuuAUACUUAGGcCUg--CUGGGCagC- -5'
8950 5' -49.1 NC_002512.2 + 24834 0.66 0.999784
Target:  5'- -cAGUA--GGUCCGGgcccGCGGCCgGUCGg -3'
miRNA:   3'- cuUUAUacUUAGGCC----UGCUGGgCAGC- -5'
8950 5' -49.1 NC_002512.2 + 11385 0.66 0.999768
Target:  5'- ------gGggUCCgacggcucggacgcGGACGACCCG-CGg -3'
miRNA:   3'- cuuuauaCuuAGG--------------CCUGCUGGGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 124955 0.67 0.999727
Target:  5'- ------cGAcgCCGGACGAggaggCCGUCGc -3'
miRNA:   3'- cuuuauaCUuaGGCCUGCUg----GGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 64620 0.67 0.999727
Target:  5'- uGAAAg--GggUCCGGggcuccGCGACgCGUCc -3'
miRNA:   3'- -CUUUauaCuuAGGCC------UGCUGgGCAGc -5'
8950 5' -49.1 NC_002512.2 + 173475 0.67 0.999727
Target:  5'- gGggGUGUGggUCuCGGAggaagaGACUCG-CGa -3'
miRNA:   3'- -CuuUAUACuuAG-GCCUg-----CUGGGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 102309 0.67 0.999727
Target:  5'- ------cGAcGUCgCGGACGGUCCGUCGg -3'
miRNA:   3'- cuuuauaCU-UAG-GCCUGCUGGGCAGC- -5'
8950 5' -49.1 NC_002512.2 + 136375 0.67 0.999727
Target:  5'- -----cUGGAUCCGGAgGGCCgGcCa -3'
miRNA:   3'- cuuuauACUUAGGCCUgCUGGgCaGc -5'
8950 5' -49.1 NC_002512.2 + 38107 0.67 0.999657
Target:  5'- gGGAAUcucUGccuGUCaCGGGCGAUCCGUCc -3'
miRNA:   3'- -CUUUAu--ACu--UAG-GCCUGCUGGGCAGc -5'
8950 5' -49.1 NC_002512.2 + 74400 0.67 0.999572
Target:  5'- --cAUggGggUCCGGACgGugCCGaCGa -3'
miRNA:   3'- cuuUAuaCuuAGGCCUG-CugGGCaGC- -5'
8950 5' -49.1 NC_002512.2 + 160137 0.67 0.999572
Target:  5'- cGAGGUGgcGAUCCGGGCGccGCgUGUCa -3'
miRNA:   3'- -CUUUAUacUUAGGCCUGC--UGgGCAGc -5'
8950 5' -49.1 NC_002512.2 + 219668 0.67 0.999572
Target:  5'- --cGUcgGGAUCUGGGCGcgccGCCCGagGa -3'
miRNA:   3'- cuuUAuaCUUAGGCCUGC----UGGGCagC- -5'
8950 5' -49.1 NC_002512.2 + 180433 0.67 0.999572
Target:  5'- ----gGUGAcggcgccCCGGGCGgcGCCCGUCa -3'
miRNA:   3'- cuuuaUACUua-----GGCCUGC--UGGGCAGc -5'
8950 5' -49.1 NC_002512.2 + 166239 0.67 0.999469
Target:  5'- gGAAGUAcUGcGUCCaGGACGgcGCUCGUCa -3'
miRNA:   3'- -CUUUAU-ACuUAGG-CCUGC--UGGGCAGc -5'
8950 5' -49.1 NC_002512.2 + 50693 0.67 0.999469
Target:  5'- ----cGUGAcgCUGGAcCGGCCCGagGa -3'
miRNA:   3'- cuuuaUACUuaGGCCU-GCUGGGCagC- -5'
8950 5' -49.1 NC_002512.2 + 115225 0.67 0.999469
Target:  5'- ----gGUGAccgagagcAUCCuGGACGACCCGa-- -3'
miRNA:   3'- cuuuaUACU--------UAGG-CCUGCUGGGCagc -5'
8950 5' -49.1 NC_002512.2 + 154462 0.67 0.999469
Target:  5'- -------cGAUCCGGACGuCCCGcccUCGa -3'
miRNA:   3'- cuuuauacUUAGGCCUGCuGGGC---AGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.