miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 3' -53 NC_002512.2 + 202101 0.66 0.994188
Target:  5'- aCCUCGUccgacCGCguCCUCGUcagcuGGUGGcGCc -3'
miRNA:   3'- -GGAGCAa----GCGguGGAGCA-----CCAUCuUG- -5'
8951 3' -53 NC_002512.2 + 2797 0.69 0.963947
Target:  5'- gCCUCGUUCGCCccACCU-GUGucuccaGUAGAc- -3'
miRNA:   3'- -GGAGCAAGCGG--UGGAgCAC------CAUCUug -5'
8951 3' -53 NC_002512.2 + 158176 0.7 0.940377
Target:  5'- cCCUCGggaCGCgG-CUCGUGGUgcAGAACc -3'
miRNA:   3'- -GGAGCaa-GCGgUgGAGCACCA--UCUUG- -5'
8951 3' -53 NC_002512.2 + 216622 1.13 0.005345
Target:  5'- aCCUCGUUCGCCACCUCGUGGUAGAACa -3'
miRNA:   3'- -GGAGCAAGCGGUGGAGCACCAUCUUG- -5'
8951 3' -53 NC_002512.2 + 202139 0.66 0.99128
Target:  5'- gUCUCGgcCGCCGCCgCG-GGgcGggUg -3'
miRNA:   3'- -GGAGCaaGCGGUGGaGCaCCauCuuG- -5'
8951 3' -53 NC_002512.2 + 156992 0.66 0.99128
Target:  5'- aCUUCGgcCGCCGCUUCG-GGcccGAGCc -3'
miRNA:   3'- -GGAGCaaGCGGUGGAGCaCCau-CUUG- -5'
8951 3' -53 NC_002512.2 + 101771 0.67 0.985743
Target:  5'- cCUUCGgcgagacggCGCCGuCCUCGcGGcGGAGCg -3'
miRNA:   3'- -GGAGCaa-------GCGGU-GGAGCaCCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 75633 0.67 0.98401
Target:  5'- cCCUC---CGCCGCUcCGUGG-AGAACc -3'
miRNA:   3'- -GGAGcaaGCGGUGGaGCACCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 132145 0.68 0.977849
Target:  5'- --aCGacCGCCACCUCGaGGUcgguGAGCg -3'
miRNA:   3'- ggaGCaaGCGGUGGAGCaCCAu---CUUG- -5'
8951 3' -53 NC_002512.2 + 94024 0.69 0.966191
Target:  5'- gCCUCGUcCGCCAgcuCCUCGgcGGUgacggcgaccgggaAGGGCg -3'
miRNA:   3'- -GGAGCAaGCGGU---GGAGCa-CCA--------------UCUUG- -5'
8951 3' -53 NC_002512.2 + 46512 0.68 0.975451
Target:  5'- -aUCGgUCGCCugCUCGUauucGGUAuauGGACg -3'
miRNA:   3'- ggAGCaAGCGGugGAGCA----CCAU---CUUG- -5'
8951 3' -53 NC_002512.2 + 184433 0.67 0.982122
Target:  5'- gCCUCGgcCGCCGCCggCGUcGGacagGGAGu -3'
miRNA:   3'- -GGAGCaaGCGGUGGa-GCA-CCa---UCUUg -5'
8951 3' -53 NC_002512.2 + 198529 0.66 0.994188
Target:  5'- cCUUCGaUCuCCAgCUCGUGGUcguagccggccAGGGCg -3'
miRNA:   3'- -GGAGCaAGcGGUgGAGCACCA-----------UCUUG- -5'
8951 3' -53 NC_002512.2 + 183968 0.68 0.975451
Target:  5'- gCUCGggcgUCGUCGCCugUCG-GGgcGGACa -3'
miRNA:   3'- gGAGCa---AGCGGUGG--AGCaCCauCUUG- -5'
8951 3' -53 NC_002512.2 + 195821 0.66 0.992355
Target:  5'- -aUCGUcgaCGCCGCCgUCGUGGggcacgccucGAGCa -3'
miRNA:   3'- ggAGCAa--GCGGUGG-AGCACCau--------CUUG- -5'
8951 3' -53 NC_002512.2 + 108419 0.67 0.98401
Target:  5'- gCUCGUcugCGCCGCC-CG-GGgccgGGGGCc -3'
miRNA:   3'- gGAGCAa--GCGGUGGaGCaCCa---UCUUG- -5'
8951 3' -53 NC_002512.2 + 215567 0.68 0.972867
Target:  5'- gCCUCGgcgUCGUCuacGCCUacaaccCGUGGgAGGACa -3'
miRNA:   3'- -GGAGCa--AGCGG---UGGA------GCACCaUCUUG- -5'
8951 3' -53 NC_002512.2 + 223254 0.69 0.963947
Target:  5'- uCCUCGggCGuCCGCgUCGUcGGggggcGGGACg -3'
miRNA:   3'- -GGAGCaaGC-GGUGgAGCA-CCa----UCUUG- -5'
8951 3' -53 NC_002512.2 + 195440 0.66 0.992355
Target:  5'- gUUCGgggUCGUCAgCUgGUGGUucgugaAGAACg -3'
miRNA:   3'- gGAGCa--AGCGGUgGAgCACCA------UCUUG- -5'
8951 3' -53 NC_002512.2 + 176686 0.66 0.990089
Target:  5'- aCUgGcgCGUCGCCUUGUGGUGu--- -3'
miRNA:   3'- gGAgCaaGCGGUGGAGCACCAUcuug -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.