miRNA display CGI


Results 41 - 60 of 175 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8951 5' -61.3 NC_002512.2 + 185624 0.67 0.722028
Target:  5'- gCGUCCCGU-GU-CGGuGCAGCUGUcCg -3'
miRNA:   3'- aGCAGGGCGuCGuGCC-CGUCGACGuG- -5'
8951 5' -61.3 NC_002512.2 + 19196 0.67 0.722028
Target:  5'- aUC-UCCCGCGGCGCcuuGCcGUUGCGCu -3'
miRNA:   3'- -AGcAGGGCGUCGUGcc-CGuCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 128876 0.67 0.722028
Target:  5'- --aUCCUGaCcGcCACGGGCAGCUGUcuGCg -3'
miRNA:   3'- agcAGGGC-GuC-GUGCCCGUCGACG--UG- -5'
8951 5' -61.3 NC_002512.2 + 80049 0.67 0.722028
Target:  5'- gUCGUCCuCGUcGCGCGGGUcGCUcucCGCc -3'
miRNA:   3'- -AGCAGG-GCGuCGUGCCCGuCGAc--GUG- -5'
8951 5' -61.3 NC_002512.2 + 84525 0.67 0.722028
Target:  5'- gUCGUagccCUCGUAGCcggcguCGGGCGGCgcggcgagGCGCu -3'
miRNA:   3'- -AGCA----GGGCGUCGu-----GCCCGUCGa-------CGUG- -5'
8951 5' -61.3 NC_002512.2 + 152704 0.67 0.712587
Target:  5'- gCGUCCC-CGGUcggggugcgGCGGGCAGggGaCACg -3'
miRNA:   3'- aGCAGGGcGUCG---------UGCCCGUCgaC-GUG- -5'
8951 5' -61.3 NC_002512.2 + 59461 0.67 0.712587
Target:  5'- gCGggaCCCGCAGCAgaaGuGGCuGCUGgACu -3'
miRNA:   3'- aGCa--GGGCGUCGUg--C-CCGuCGACgUG- -5'
8951 5' -61.3 NC_002512.2 + 147464 0.67 0.712587
Target:  5'- cUGUCgCUGCuggucuucGCGCGGGC-GCUGCGg -3'
miRNA:   3'- aGCAG-GGCGu-------CGUGCCCGuCGACGUg -5'
8951 5' -61.3 NC_002512.2 + 184522 0.67 0.703086
Target:  5'- cUCGUCgCaGCAGuCGCGGGguCAGCcggcgGCGCg -3'
miRNA:   3'- -AGCAGgG-CGUC-GUGCCC--GUCGa----CGUG- -5'
8951 5' -61.3 NC_002512.2 + 196739 0.67 0.703086
Target:  5'- gUCGUCCUGUacGGCuCGaccGGCGGCgUGUACu -3'
miRNA:   3'- -AGCAGGGCG--UCGuGC---CCGUCG-ACGUG- -5'
8951 5' -61.3 NC_002512.2 + 217086 0.67 0.703086
Target:  5'- cCG-CCCGagcauccGCAgGGGCAGCggggGCGCc -3'
miRNA:   3'- aGCaGGGCgu-----CGUgCCCGUCGa---CGUG- -5'
8951 5' -61.3 NC_002512.2 + 103091 0.67 0.703086
Target:  5'- gUCGcagCCgaaGCAGguCGGGUucugacacaGGCUGCGCg -3'
miRNA:   3'- -AGCa--GGg--CGUCguGCCCG---------UCGACGUG- -5'
8951 5' -61.3 NC_002512.2 + 211737 0.67 0.703086
Target:  5'- cUCGgccuggCCCGCgacgcGGCcCGGGC-GCUGCGg -3'
miRNA:   3'- -AGCa-----GGGCG-----UCGuGCCCGuCGACGUg -5'
8951 5' -61.3 NC_002512.2 + 103092 0.67 0.703086
Target:  5'- gCGaUCCCGgGG-ACGGGC-GCgGCACg -3'
miRNA:   3'- aGC-AGGGCgUCgUGCCCGuCGaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 5296 0.67 0.702133
Target:  5'- gCGUCCCGCGcccugacGUAaccCGGGUAGCcGCGg -3'
miRNA:   3'- aGCAGGGCGU-------CGU---GCCCGUCGaCGUg -5'
8951 5' -61.3 NC_002512.2 + 216479 0.67 0.701179
Target:  5'- gCGUCCCacagggaggcGCAGCGCGucaGGUAGCggacgaaccgcgGCACc -3'
miRNA:   3'- aGCAGGG----------CGUCGUGC---CCGUCGa-----------CGUG- -5'
8951 5' -61.3 NC_002512.2 + 79585 0.67 0.697358
Target:  5'- -gGUCUCGCuccuccgccucuuCGCGGGCGGCaGCGCc -3'
miRNA:   3'- agCAGGGCGuc-----------GUGCCCGUCGaCGUG- -5'
8951 5' -61.3 NC_002512.2 + 81559 0.67 0.69353
Target:  5'- -gGUCgUGCGGguuCACGGGCAGguugUGCACg -3'
miRNA:   3'- agCAGgGCGUC---GUGCCCGUCg---ACGUG- -5'
8951 5' -61.3 NC_002512.2 + 135334 0.67 0.69353
Target:  5'- gCGUCagCCGC-GC-CGGGguGCUGCu- -3'
miRNA:   3'- aGCAG--GGCGuCGuGCCCguCGACGug -5'
8951 5' -61.3 NC_002512.2 + 80635 0.67 0.69353
Target:  5'- cCGUCCgGCcGUcCGcGGCGGCgGCGCc -3'
miRNA:   3'- aGCAGGgCGuCGuGC-CCGUCGaCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.