miRNA display CGI


Results 61 - 80 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 3' -57.1 NC_002512.2 + 131629 0.67 0.908248
Target:  5'- gGCCACGAagACGCuCUCGgAGUUG-AGCAc -3'
miRNA:   3'- -UGGUGCU--UGCGcGGGC-UCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 150912 0.67 0.908248
Target:  5'- gGCCGCGGACGacgcuaaGUCCGAGcCGgacuuaGGCu -3'
miRNA:   3'- -UGGUGCUUGCg------CGGGCUCaGCa-----UCGu -5'
8952 3' -57.1 NC_002512.2 + 192269 0.67 0.908248
Target:  5'- -aCGCGAGCGUGCUCGGGaCGcucuGCGu -3'
miRNA:   3'- ugGUGCUUGCGCGGGCUCaGCau--CGU- -5'
8952 3' -57.1 NC_002512.2 + 98988 0.67 0.902264
Target:  5'- gACC-CGGACG-GaagaCCGAGUCGUGGgAg -3'
miRNA:   3'- -UGGuGCUUGCgCg---GGCUCAGCAUCgU- -5'
8952 3' -57.1 NC_002512.2 + 125996 0.67 0.914012
Target:  5'- gUCGCGuaccGACGCGUaCCGuuUCGUAGCGc -3'
miRNA:   3'- uGGUGC----UUGCGCG-GGCucAGCAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 2460 0.67 0.896065
Target:  5'- gACCGCGGccCGCGCCCGcgcgcgagaguaGGUCcgGGCGg -3'
miRNA:   3'- -UGGUGCUu-GCGCGGGC------------UCAGcaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 60927 0.67 0.889651
Target:  5'- gACCGCGAA-GCGCuUCGcGUCGgagAGCGa -3'
miRNA:   3'- -UGGUGCUUgCGCG-GGCuCAGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 73613 0.67 0.883027
Target:  5'- gGCCAcucggagaaguCGAAgGCGCcgCCGGGcUCGUAGUAg -3'
miRNA:   3'- -UGGU-----------GCUUgCGCG--GGCUC-AGCAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 147197 0.67 0.914012
Target:  5'- cGCgCACGGACGCcgacaGCCCGAG-CGggaccGCGa -3'
miRNA:   3'- -UG-GUGCUUGCG-----CGGGCUCaGCau---CGU- -5'
8952 3' -57.1 NC_002512.2 + 105149 0.67 0.883027
Target:  5'- uCCACGAACaUGgCCGAGUCGgcGgGg -3'
miRNA:   3'- uGGUGCUUGcGCgGGCUCAGCauCgU- -5'
8952 3' -57.1 NC_002512.2 + 11678 0.67 0.883027
Target:  5'- cGCCGCGGcccgaggcGgGgGCCCGAGgggCGaGGCAg -3'
miRNA:   3'- -UGGUGCU--------UgCgCGGGCUCa--GCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 67715 0.68 0.875503
Target:  5'- gACCgACGGACGCGgCCGcuuucgcGGUCGgcGUg -3'
miRNA:   3'- -UGG-UGCUUGCGCgGGC-------UCAGCauCGu -5'
8952 3' -57.1 NC_002512.2 + 97506 0.68 0.876197
Target:  5'- gGCCAUGGcgGUGUUCGGGaUCGUGGCGu -3'
miRNA:   3'- -UGGUGCUugCGCGGGCUC-AGCAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 213213 0.68 0.869164
Target:  5'- gUCugGGAC-CG-CCGGGUCGUGGCc -3'
miRNA:   3'- uGGugCUUGcGCgGGCUCAGCAUCGu -5'
8952 3' -57.1 NC_002512.2 + 82327 0.68 0.869164
Target:  5'- gGCCGCGGGC-CGCCCcGGcggGUAGCGg -3'
miRNA:   3'- -UGGUGCUUGcGCGGGcUCag-CAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 96776 0.68 0.869164
Target:  5'- cACCAUGGGCGUaGCCgacgggGAGUCGcUGGCGc -3'
miRNA:   3'- -UGGUGCUUGCG-CGGg-----CUCAGC-AUCGU- -5'
8952 3' -57.1 NC_002512.2 + 8415 0.68 0.861934
Target:  5'- cGCCAgGAACGCGCaCCGcggccGGUCGgacgaccGCGc -3'
miRNA:   3'- -UGGUgCUUGCGCG-GGC-----UCAGCau-----CGU- -5'
8952 3' -57.1 NC_002512.2 + 3104 0.68 0.861934
Target:  5'- gACCACG-GCGuCGCCCGAGaCGUccucGCc -3'
miRNA:   3'- -UGGUGCuUGC-GCGGGCUCaGCAu---CGu -5'
8952 3' -57.1 NC_002512.2 + 130277 0.68 0.854511
Target:  5'- gACCGCGAcgaGCGCgggGCCCGGGaCGU-GCc -3'
miRNA:   3'- -UGGUGCU---UGCG---CGGGCUCaGCAuCGu -5'
8952 3' -57.1 NC_002512.2 + 115721 0.68 0.846902
Target:  5'- cGCCAcCGAGgaggacCGgGCCCGGGUCGUccucugccGGCu -3'
miRNA:   3'- -UGGU-GCUU------GCgCGGGCUCAGCA--------UCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.