miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 3' -57.1 NC_002512.2 + 67279 0.66 0.939519
Target:  5'- cCCAUG-ACGCGCUgGgcGGUCGagUAGCAg -3'
miRNA:   3'- uGGUGCuUGCGCGGgC--UCAGC--AUCGU- -5'
8952 3' -57.1 NC_002512.2 + 108957 0.66 0.943957
Target:  5'- uGCCcguCGggU-CGCCCGGGUcCGUcAGCAg -3'
miRNA:   3'- -UGGu--GCuuGcGCGGGCUCA-GCA-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 99213 0.66 0.919557
Target:  5'- uCCGCGGcCGcCGCCgugUGGGUCGUGcGCAu -3'
miRNA:   3'- uGGUGCUuGC-GCGG---GCUCAGCAU-CGU- -5'
8952 3' -57.1 NC_002512.2 + 12271 0.66 0.93675
Target:  5'- gACC-CGuGGCGcCGCCCGAGUCGccgacgacccccgaGGCGg -3'
miRNA:   3'- -UGGuGC-UUGC-GCGGGCUCAGCa-------------UCGU- -5'
8952 3' -57.1 NC_002512.2 + 113168 0.66 0.934861
Target:  5'- gGCCACGucgGACGUGCCgGGGcugCGUuguuccagAGCGg -3'
miRNA:   3'- -UGGUGC---UUGCGCGGgCUCa--GCA--------UCGU- -5'
8952 3' -57.1 NC_002512.2 + 125148 0.66 0.929981
Target:  5'- aACCGCGGGgGC-CCCGGGggCG-GGCGg -3'
miRNA:   3'- -UGGUGCUUgCGcGGGCUCa-GCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 18441 0.66 0.92488
Target:  5'- aGCCGC--AgGCGCCCGAGcUCcgGGCAg -3'
miRNA:   3'- -UGGUGcuUgCGCGGGCUC-AGcaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 83441 0.66 0.939519
Target:  5'- gGCC-UGAAgUGCGCCCGgacgaAGUCGUgcggGGCGg -3'
miRNA:   3'- -UGGuGCUU-GCGCGGGC-----UCAGCA----UCGU- -5'
8952 3' -57.1 NC_002512.2 + 137803 0.66 0.92488
Target:  5'- gGCCGCGcguccGGCGgcCGUCCGucUCGUAGCGu -3'
miRNA:   3'- -UGGUGC-----UUGC--GCGGGCucAGCAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 1996 0.66 0.92488
Target:  5'- cGCCuCGGACuCGCCCGcGUCGccugAGCc -3'
miRNA:   3'- -UGGuGCUUGcGCGGGCuCAGCa---UCGu -5'
8952 3' -57.1 NC_002512.2 + 219059 0.66 0.943957
Target:  5'- gUCACGAACGC-CgCGAGacaUGUAGCGa -3'
miRNA:   3'- uGGUGCUUGCGcGgGCUCa--GCAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 12913 0.66 0.929981
Target:  5'- aGCaCAUGGAgUGCGCCCGGG-CGUuccGCGc -3'
miRNA:   3'- -UG-GUGCUU-GCGCGGGCUCaGCAu--CGU- -5'
8952 3' -57.1 NC_002512.2 + 15647 0.66 0.917917
Target:  5'- gGCCGCGGGCGgcgagccgacgagcCGCCUGAcGUCccggGGCAg -3'
miRNA:   3'- -UGGUGCUUGC--------------GCGGGCU-CAGca--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 5495 0.66 0.943957
Target:  5'- gGCgCGCGucCGCGCCgGGGUCGcgAGg- -3'
miRNA:   3'- -UG-GUGCuuGCGCGGgCUCAGCa-UCgu -5'
8952 3' -57.1 NC_002512.2 + 30264 0.66 0.92488
Target:  5'- cCCGCGGACGCG-CgGAGcCGgcGCc -3'
miRNA:   3'- uGGUGCUUGCGCgGgCUCaGCauCGu -5'
8952 3' -57.1 NC_002512.2 + 128018 0.66 0.939519
Target:  5'- cCCGCGGcuGCuGCGgCCGGGUCGcucgcugccucUGGCGg -3'
miRNA:   3'- uGGUGCU--UG-CGCgGGCUCAGC-----------AUCGU- -5'
8952 3' -57.1 NC_002512.2 + 155080 0.66 0.943957
Target:  5'- cGCCGCugccGgGUGCCCGGG-CGUcAGCAg -3'
miRNA:   3'- -UGGUGcu--UgCGCGGGCUCaGCA-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 74635 0.66 0.939519
Target:  5'- cGCCGCGcGACG-GCCCGGGggagaUCGggggAGCu -3'
miRNA:   3'- -UGGUGC-UUGCgCGGGCUC-----AGCa---UCGu -5'
8952 3' -57.1 NC_002512.2 + 142157 0.66 0.929981
Target:  5'- cCCGCGu-CGCGUCCGAGaggagccgucUCGcGGCGu -3'
miRNA:   3'- uGGUGCuuGCGCGGGCUC----------AGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 193321 0.66 0.924358
Target:  5'- cGCCGCuucGGCGCGUucaucugcggucuCCGAGUCGacaAGCAg -3'
miRNA:   3'- -UGGUGc--UUGCGCG-------------GGCUCAGCa--UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.