miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 3' -57.1 NC_002512.2 + 216526 1.08 0.004266
Target:  5'- cACCACGAACGCGCCCGAGUCGUAGCAg -3'
miRNA:   3'- -UGGUGCUUGCGCGGGCUCAGCAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 84853 0.77 0.379383
Target:  5'- gGCCgucccggGCGuuGCGCGCCCGGG-CGUAGCGg -3'
miRNA:   3'- -UGG-------UGCu-UGCGCGGGCUCaGCAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 178830 0.77 0.380177
Target:  5'- cGCC-CGGACGUGCUCGGGUCGcaGGCAc -3'
miRNA:   3'- -UGGuGCUUGCGCGGGCUCAGCa-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 103667 0.74 0.5682
Target:  5'- gGCCACGAGCGC-CUCGAcGUCGcagagGGCGg -3'
miRNA:   3'- -UGGUGCUUGCGcGGGCU-CAGCa----UCGU- -5'
8952 3' -57.1 NC_002512.2 + 224341 0.74 0.5682
Target:  5'- uCCGCGGcgcCGCGCCgGGGUCGcgGGCGg -3'
miRNA:   3'- uGGUGCUu--GCGCGGgCUCAGCa-UCGU- -5'
8952 3' -57.1 NC_002512.2 + 128298 0.73 0.577939
Target:  5'- --uGCGggUGCacGCCCGAGUCGcGGCAc -3'
miRNA:   3'- uggUGCuuGCG--CGGGCUCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 83824 0.73 0.577939
Target:  5'- gGCgGCGGcucCGgGCCCGGGUCGUcGCAg -3'
miRNA:   3'- -UGgUGCUu--GCgCGGGCUCAGCAuCGU- -5'
8952 3' -57.1 NC_002512.2 + 113665 0.73 0.587714
Target:  5'- gGCCGCGAGggUGCGCgCGGGUCGgacguUGGCGc -3'
miRNA:   3'- -UGGUGCUU--GCGCGgGCUCAGC-----AUCGU- -5'
8952 3' -57.1 NC_002512.2 + 36458 0.73 0.587714
Target:  5'- gGCCGCGGuCGCGCUCGuAGUCGUcGUc -3'
miRNA:   3'- -UGGUGCUuGCGCGGGC-UCAGCAuCGu -5'
8952 3' -57.1 NC_002512.2 + 95207 0.73 0.587714
Target:  5'- uCCGCGGucGCGCGUCCGuuGUCGUAGa- -3'
miRNA:   3'- uGGUGCU--UGCGCGGGCu-CAGCAUCgu -5'
8952 3' -57.1 NC_002512.2 + 155361 0.73 0.587714
Target:  5'- -aCACGAGCgGCGCUCGAgGUCGgGGCGg -3'
miRNA:   3'- ugGUGCUUG-CGCGGGCU-CAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 90922 0.73 0.606365
Target:  5'- gGCCGCGAACGgGgCCGGcgcggccgccgccGUCGUGGUg -3'
miRNA:   3'- -UGGUGCUUGCgCgGGCU-------------CAGCAUCGu -5'
8952 3' -57.1 NC_002512.2 + 6361 0.73 0.607349
Target:  5'- gGCCGCGGGCGCGUgCCGuucuccgccguGGUCGUcGCGa -3'
miRNA:   3'- -UGGUGCUUGCGCG-GGC-----------UCAGCAuCGU- -5'
8952 3' -57.1 NC_002512.2 + 82013 0.72 0.636911
Target:  5'- cGCgGCGAGcCGuCGCCCGGGUCGgGGUc -3'
miRNA:   3'- -UGgUGCUU-GC-GCGGGCUCAGCaUCGu -5'
8952 3' -57.1 NC_002512.2 + 64637 0.72 0.646768
Target:  5'- uCCGCG-ACGCGUCCGcgaGGUCGUGGa- -3'
miRNA:   3'- uGGUGCuUGCGCGGGC---UCAGCAUCgu -5'
8952 3' -57.1 NC_002512.2 + 81823 0.72 0.675265
Target:  5'- gACCGCG-GCGCGUCCGAucugccggaccggGUCGgggAGCGu -3'
miRNA:   3'- -UGGUGCuUGCGCGGGCU-------------CAGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 127639 0.72 0.676243
Target:  5'- cGCC-CGGAccCGgGCCCGGGUCGgacagAGCGc -3'
miRNA:   3'- -UGGuGCUU--GCgCGGGCUCAGCa----UCGU- -5'
8952 3' -57.1 NC_002512.2 + 203116 0.72 0.676243
Target:  5'- gGCCA-GGGCGuCGgCCGAGUCGUGGg- -3'
miRNA:   3'- -UGGUgCUUGC-GCgGGCUCAGCAUCgu -5'
8952 3' -57.1 NC_002512.2 + 224638 0.72 0.676243
Target:  5'- cGCCGCGGccucggccuACGCGCCCGAGuUCGa---- -3'
miRNA:   3'- -UGGUGCU---------UGCGCGGGCUC-AGCaucgu -5'
8952 3' -57.1 NC_002512.2 + 60828 0.71 0.686012
Target:  5'- cGCCGCGGAgccccuCGCGCCCGAGgagaugcCGgcGCc -3'
miRNA:   3'- -UGGUGCUU------GCGCGGGCUCa------GCauCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.