miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 3' -57.1 NC_002512.2 + 71291 0.7 0.761988
Target:  5'- cCCGgGAGCGCaccacGUCCGAGUCGUAcGUg -3'
miRNA:   3'- uGGUgCUUGCG-----CGGGCUCAGCAU-CGu -5'
8952 3' -57.1 NC_002512.2 + 40354 0.71 0.686012
Target:  5'- uGCCGCGGACGCcgaccgcggcgaGCCCGGGccCGgAGCGu -3'
miRNA:   3'- -UGGUGCUUGCG------------CGGGCUCa-GCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 135908 0.71 0.686012
Target:  5'- uUCGCGGACGCGCagcgacacgucCUGAGUCGguacGGCAu -3'
miRNA:   3'- uGGUGCUUGCGCG-----------GGCUCAGCa---UCGU- -5'
8952 3' -57.1 NC_002512.2 + 60828 0.71 0.686012
Target:  5'- cGCCGCGGAgccccuCGCGCCCGAGgagaugcCGgcGCc -3'
miRNA:   3'- -UGGUGCUU------GCGCGGGCUCa------GCauCGu -5'
8952 3' -57.1 NC_002512.2 + 37818 0.71 0.695739
Target:  5'- gUCAgGGACGCGUCCGAGcCGUAcaggucGCAa -3'
miRNA:   3'- uGGUgCUUGCGCGGGCUCaGCAU------CGU- -5'
8952 3' -57.1 NC_002512.2 + 102152 0.71 0.724591
Target:  5'- gGCCGCGAcCGCGgCUGGGUCGUcgaucGCu -3'
miRNA:   3'- -UGGUGCUuGCGCgGGCUCAGCAu----CGu -5'
8952 3' -57.1 NC_002512.2 + 111813 0.7 0.742535
Target:  5'- cGCCGCGAACGUcugcggguccgggGUCCGguGGUCGUAGa- -3'
miRNA:   3'- -UGGUGCUUGCG-------------CGGGC--UCAGCAUCgu -5'
8952 3' -57.1 NC_002512.2 + 114031 0.7 0.743471
Target:  5'- cGCCucgGCGAACGCcucgaggcagggGCCCGcGUCGUgcAGCAc -3'
miRNA:   3'- -UGG---UGCUUGCG------------CGGGCuCAGCA--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 19930 0.7 0.752779
Target:  5'- gACCuuGAGgaccCGCGCCCG-GUCG-AGCAg -3'
miRNA:   3'- -UGGugCUU----GCGCGGGCuCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 127639 0.72 0.676243
Target:  5'- cGCC-CGGAccCGgGCCCGGGUCGgacagAGCGc -3'
miRNA:   3'- -UGGuGCUU--GCgCGGGCUCAGCa----UCGU- -5'
8952 3' -57.1 NC_002512.2 + 81823 0.72 0.675265
Target:  5'- gACCGCG-GCGCGUCCGAucugccggaccggGUCGgggAGCGu -3'
miRNA:   3'- -UGGUGCuUGCGCGGGCU-------------CAGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 64637 0.72 0.646768
Target:  5'- uCCGCG-ACGCGUCCGcgaGGUCGUGGa- -3'
miRNA:   3'- uGGUGCuUGCGCGGGC---UCAGCAUCgu -5'
8952 3' -57.1 NC_002512.2 + 128298 0.73 0.577939
Target:  5'- --uGCGggUGCacGCCCGAGUCGcGGCAc -3'
miRNA:   3'- uggUGCuuGCG--CGGGCUCAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 83824 0.73 0.577939
Target:  5'- gGCgGCGGcucCGgGCCCGGGUCGUcGCAg -3'
miRNA:   3'- -UGgUGCUu--GCgCGGGCUCAGCAuCGU- -5'
8952 3' -57.1 NC_002512.2 + 155361 0.73 0.587714
Target:  5'- -aCACGAGCgGCGCUCGAgGUCGgGGCGg -3'
miRNA:   3'- ugGUGCUUG-CGCGGGCU-CAGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 95207 0.73 0.587714
Target:  5'- uCCGCGGucGCGCGUCCGuuGUCGUAGa- -3'
miRNA:   3'- uGGUGCU--UGCGCGGGCu-CAGCAUCgu -5'
8952 3' -57.1 NC_002512.2 + 36458 0.73 0.587714
Target:  5'- gGCCGCGGuCGCGCUCGuAGUCGUcGUc -3'
miRNA:   3'- -UGGUGCUuGCGCGGGC-UCAGCAuCGu -5'
8952 3' -57.1 NC_002512.2 + 90922 0.73 0.606365
Target:  5'- gGCCGCGAACGgGgCCGGcgcggccgccgccGUCGUGGUg -3'
miRNA:   3'- -UGGUGCUUGCgCgGGCU-------------CAGCAUCGu -5'
8952 3' -57.1 NC_002512.2 + 6361 0.73 0.607349
Target:  5'- gGCCGCGGGCGCGUgCCGuucuccgccguGGUCGUcGCGa -3'
miRNA:   3'- -UGGUGCUUGCGCG-GGC-----------UCAGCAuCGU- -5'
8952 3' -57.1 NC_002512.2 + 82013 0.72 0.636911
Target:  5'- cGCgGCGAGcCGuCGCCCGGGUCGgGGUc -3'
miRNA:   3'- -UGgUGCUU-GC-GCGGGCUCAGCaUCGu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.