Results 1 - 20 of 143 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8952 | 3' | -57.1 | NC_002512.2 | + | 71291 | 0.7 | 0.761988 |
Target: 5'- cCCGgGAGCGCaccacGUCCGAGUCGUAcGUg -3' miRNA: 3'- uGGUgCUUGCG-----CGGGCUCAGCAU-CGu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 40354 | 0.71 | 0.686012 |
Target: 5'- uGCCGCGGACGCcgaccgcggcgaGCCCGGGccCGgAGCGu -3' miRNA: 3'- -UGGUGCUUGCG------------CGGGCUCa-GCaUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 135908 | 0.71 | 0.686012 |
Target: 5'- uUCGCGGACGCGCagcgacacgucCUGAGUCGguacGGCAu -3' miRNA: 3'- uGGUGCUUGCGCG-----------GGCUCAGCa---UCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 60828 | 0.71 | 0.686012 |
Target: 5'- cGCCGCGGAgccccuCGCGCCCGAGgagaugcCGgcGCc -3' miRNA: 3'- -UGGUGCUU------GCGCGGGCUCa------GCauCGu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 37818 | 0.71 | 0.695739 |
Target: 5'- gUCAgGGACGCGUCCGAGcCGUAcaggucGCAa -3' miRNA: 3'- uGGUgCUUGCGCGGGCUCaGCAU------CGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 102152 | 0.71 | 0.724591 |
Target: 5'- gGCCGCGAcCGCGgCUGGGUCGUcgaucGCu -3' miRNA: 3'- -UGGUGCUuGCGCgGGCUCAGCAu----CGu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 111813 | 0.7 | 0.742535 |
Target: 5'- cGCCGCGAACGUcugcggguccgggGUCCGguGGUCGUAGa- -3' miRNA: 3'- -UGGUGCUUGCG-------------CGGGC--UCAGCAUCgu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 114031 | 0.7 | 0.743471 |
Target: 5'- cGCCucgGCGAACGCcucgaggcagggGCCCGcGUCGUgcAGCAc -3' miRNA: 3'- -UGG---UGCUUGCG------------CGGGCuCAGCA--UCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 19930 | 0.7 | 0.752779 |
Target: 5'- gACCuuGAGgaccCGCGCCCG-GUCG-AGCAg -3' miRNA: 3'- -UGGugCUU----GCGCGGGCuCAGCaUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 127639 | 0.72 | 0.676243 |
Target: 5'- cGCC-CGGAccCGgGCCCGGGUCGgacagAGCGc -3' miRNA: 3'- -UGGuGCUU--GCgCGGGCUCAGCa----UCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 81823 | 0.72 | 0.675265 |
Target: 5'- gACCGCG-GCGCGUCCGAucugccggaccggGUCGgggAGCGu -3' miRNA: 3'- -UGGUGCuUGCGCGGGCU-------------CAGCa--UCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 64637 | 0.72 | 0.646768 |
Target: 5'- uCCGCG-ACGCGUCCGcgaGGUCGUGGa- -3' miRNA: 3'- uGGUGCuUGCGCGGGC---UCAGCAUCgu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 128298 | 0.73 | 0.577939 |
Target: 5'- --uGCGggUGCacGCCCGAGUCGcGGCAc -3' miRNA: 3'- uggUGCuuGCG--CGGGCUCAGCaUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 83824 | 0.73 | 0.577939 |
Target: 5'- gGCgGCGGcucCGgGCCCGGGUCGUcGCAg -3' miRNA: 3'- -UGgUGCUu--GCgCGGGCUCAGCAuCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 155361 | 0.73 | 0.587714 |
Target: 5'- -aCACGAGCgGCGCUCGAgGUCGgGGCGg -3' miRNA: 3'- ugGUGCUUG-CGCGGGCU-CAGCaUCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 95207 | 0.73 | 0.587714 |
Target: 5'- uCCGCGGucGCGCGUCCGuuGUCGUAGa- -3' miRNA: 3'- uGGUGCU--UGCGCGGGCu-CAGCAUCgu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 36458 | 0.73 | 0.587714 |
Target: 5'- gGCCGCGGuCGCGCUCGuAGUCGUcGUc -3' miRNA: 3'- -UGGUGCUuGCGCGGGC-UCAGCAuCGu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 90922 | 0.73 | 0.606365 |
Target: 5'- gGCCGCGAACGgGgCCGGcgcggccgccgccGUCGUGGUg -3' miRNA: 3'- -UGGUGCUUGCgCgGGCU-------------CAGCAUCGu -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 6361 | 0.73 | 0.607349 |
Target: 5'- gGCCGCGGGCGCGUgCCGuucuccgccguGGUCGUcGCGa -3' miRNA: 3'- -UGGUGCUUGCGCG-GGC-----------UCAGCAuCGU- -5' |
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8952 | 3' | -57.1 | NC_002512.2 | + | 82013 | 0.72 | 0.636911 |
Target: 5'- cGCgGCGAGcCGuCGCCCGGGUCGgGGUc -3' miRNA: 3'- -UGgUGCUU-GC-GCGGGCUCAGCaUCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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