miRNA display CGI


Results 21 - 40 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 3' -57.1 NC_002512.2 + 142157 0.66 0.929981
Target:  5'- cCCGCGu-CGCGUCCGAGaggagccgucUCGcGGCGu -3'
miRNA:   3'- uGGUGCuuGCGCGGGCUC----------AGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 125148 0.66 0.929981
Target:  5'- aACCGCGGGgGC-CCCGGGggCG-GGCGg -3'
miRNA:   3'- -UGGUGCUUgCGcGGGCUCa-GCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 12913 0.66 0.929981
Target:  5'- aGCaCAUGGAgUGCGCCCGGG-CGUuccGCGc -3'
miRNA:   3'- -UG-GUGCUU-GCGCGGGCUCaGCAu--CGU- -5'
8952 3' -57.1 NC_002512.2 + 113203 0.66 0.929481
Target:  5'- uCCGCGAGCGggagccggguccuCGCCCGGGgagaCG-GGCAc -3'
miRNA:   3'- uGGUGCUUGC-------------GCGGGCUCa---GCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 107840 0.66 0.92488
Target:  5'- aGCCGCcGACGcCGcCCCGGG-CGUGcGCGa -3'
miRNA:   3'- -UGGUGcUUGC-GC-GGGCUCaGCAU-CGU- -5'
8952 3' -57.1 NC_002512.2 + 1996 0.66 0.92488
Target:  5'- cGCCuCGGACuCGCCCGcGUCGccugAGCc -3'
miRNA:   3'- -UGGuGCUUGcGCGGGCuCAGCa---UCGu -5'
8952 3' -57.1 NC_002512.2 + 201415 0.66 0.92488
Target:  5'- uCCACG-AUGCGCUucuggugucggCGGGUCGUcGCGa -3'
miRNA:   3'- uGGUGCuUGCGCGG-----------GCUCAGCAuCGU- -5'
8952 3' -57.1 NC_002512.2 + 137803 0.66 0.92488
Target:  5'- gGCCGCGcguccGGCGgcCGUCCGucUCGUAGCGu -3'
miRNA:   3'- -UGGUGC-----UUGC--GCGGGCucAGCAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 30264 0.66 0.92488
Target:  5'- cCCGCGGACGCG-CgGAGcCGgcGCc -3'
miRNA:   3'- uGGUGCUUGCGCgGgCUCaGCauCGu -5'
8952 3' -57.1 NC_002512.2 + 18441 0.66 0.92488
Target:  5'- aGCCGC--AgGCGCCCGAGcUCcgGGCAg -3'
miRNA:   3'- -UGGUGcuUgCGCGGGCUC-AGcaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 102463 0.66 0.92488
Target:  5'- gUCGCGGaggaggGCGCGCCCGucgCgGUGGCGg -3'
miRNA:   3'- uGGUGCU------UGCGCGGGCucaG-CAUCGU- -5'
8952 3' -57.1 NC_002512.2 + 193321 0.66 0.924358
Target:  5'- cGCCGCuucGGCGCGUucaucugcggucuCCGAGUCGacaAGCAg -3'
miRNA:   3'- -UGGUGc--UUGCGCG-------------GGCUCAGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 154261 0.66 0.919557
Target:  5'- cCCGCGugcGCGUGCCCGcGUgcgCGUGcGCAg -3'
miRNA:   3'- uGGUGCu--UGCGCGGGCuCA---GCAU-CGU- -5'
8952 3' -57.1 NC_002512.2 + 95772 0.66 0.919557
Target:  5'- cGCCugGAcggGgGCGUCCGAG-CGguaGGCGc -3'
miRNA:   3'- -UGGugCU---UgCGCGGGCUCaGCa--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 99213 0.66 0.919557
Target:  5'- uCCGCGGcCGcCGCCgugUGGGUCGUGcGCAu -3'
miRNA:   3'- uGGUGCUuGC-GCGG---GCUCAGCAU-CGU- -5'
8952 3' -57.1 NC_002512.2 + 198144 0.66 0.919557
Target:  5'- -gCGCGAGCcccGCGCgggCCGGGUCGgcGCc -3'
miRNA:   3'- ugGUGCUUG---CGCG---GGCUCAGCauCGu -5'
8952 3' -57.1 NC_002512.2 + 15647 0.66 0.917917
Target:  5'- gGCCGCGGGCGgcgagccgacgagcCGCCUGAcGUCccggGGCAg -3'
miRNA:   3'- -UGGUGCUUGC--------------GCGGGCU-CAGca--UCGU- -5'
8952 3' -57.1 NC_002512.2 + 32574 0.67 0.914012
Target:  5'- cGCCGCGG--GUGCCgGGGUCGUGuCGg -3'
miRNA:   3'- -UGGUGCUugCGCGGgCUCAGCAUcGU- -5'
8952 3' -57.1 NC_002512.2 + 28057 0.67 0.914012
Target:  5'- gGCCGCGGAaggaGCcCCCGGG-CGcGGCGg -3'
miRNA:   3'- -UGGUGCUUg---CGcGGGCUCaGCaUCGU- -5'
8952 3' -57.1 NC_002512.2 + 86654 0.67 0.914012
Target:  5'- gAUCGCGGuggcCGCGUCCGAG-CGgacGGCGc -3'
miRNA:   3'- -UGGUGCUu---GCGCGGGCUCaGCa--UCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.