miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 5' -62.8 NC_002512.2 + 25937 0.66 0.671011
Target:  5'- uGCGUCGGCcgGgGGCcacgaGGGCCucguaguAGCGGa -3'
miRNA:   3'- uUGCGGUCGuaCgCCG-----CCCGG-------UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 9064 0.66 0.642963
Target:  5'- cGACGagcaCGGCcaGCGGCGGGaCCAcgaGCGGg -3'
miRNA:   3'- -UUGCg---GUCGuaCGCCGCCC-GGU---CGCU- -5'
8952 5' -62.8 NC_002512.2 + 24831 0.66 0.681597
Target:  5'- --aGCCAGUAgguccgggcccGCGGCcGGUCGGCGGc -3'
miRNA:   3'- uugCGGUCGUa----------CGCCGcCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 46724 0.66 0.681597
Target:  5'- uACGUCauGGCGgcgGCGGCGGGgaAGCGc -3'
miRNA:   3'- uUGCGG--UCGUa--CGCCGCCCggUCGCu -5'
8952 5' -62.8 NC_002512.2 + 21148 0.66 0.661357
Target:  5'- gGGCGacugccuCCGGUcgGCGGCGcucccgaucuGGUCGGCGAg -3'
miRNA:   3'- -UUGC-------GGUCGuaCGCCGC----------CCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 113181 0.66 0.662324
Target:  5'- -gUGCCGgggcuGCGUuguuccagaGCGGCGucGGCCAGCGGc -3'
miRNA:   3'- uuGCGGU-----CGUA---------CGCCGC--CCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 18140 0.66 0.662324
Target:  5'- cAGCGCCcgGGCc-GCGucGCGGGCCAGgcCGAg -3'
miRNA:   3'- -UUGCGG--UCGuaCGC--CGCCCGGUC--GCU- -5'
8952 5' -62.8 NC_002512.2 + 87438 0.66 0.652651
Target:  5'- -uCGUCAGCGUGCGGggauccgaucuCGGGaCgAGCGu -3'
miRNA:   3'- uuGCGGUCGUACGCC-----------GCCC-GgUCGCu -5'
8952 5' -62.8 NC_002512.2 + 24281 0.66 0.666188
Target:  5'- cGGCGaCGGCAUcccgcgggacaGCGGCGGGgcgaacugcggucccCCGGCGGu -3'
miRNA:   3'- -UUGCgGUCGUA-----------CGCCGCCC---------------GGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 126505 0.66 0.652651
Target:  5'- gAGCGCgAGCGccuCGGCGGcuCCGGCGGc -3'
miRNA:   3'- -UUGCGgUCGUac-GCCGCCc-GGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 22942 0.66 0.652651
Target:  5'- -uCGCUgaagGGCAcGCGGCGGuguGCCAGCc- -3'
miRNA:   3'- uuGCGG----UCGUaCGCCGCC---CGGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 104276 0.66 0.669083
Target:  5'- -cCGCCGGCGUcuuucucgcguccgGCGGCGGGa-GGCu- -3'
miRNA:   3'- uuGCGGUCGUA--------------CGCCGCCCggUCGcu -5'
8952 5' -62.8 NC_002512.2 + 11445 0.66 0.671975
Target:  5'- gGACGCC-GCGgaCGG-GGGCCGGgGAa -3'
miRNA:   3'- -UUGCGGuCGUacGCCgCCCGGUCgCU- -5'
8952 5' -62.8 NC_002512.2 + 129097 0.66 0.642963
Target:  5'- gGACgGgCGGCGucUGCGGCGGGCgGuccucuGCGAc -3'
miRNA:   3'- -UUG-CgGUCGU--ACGCCGCCCGgU------CGCU- -5'
8952 5' -62.8 NC_002512.2 + 128188 0.66 0.662324
Target:  5'- -uCGCCgAGCGggccGcCGGCGGGaCCGGgGAc -3'
miRNA:   3'- uuGCGG-UCGUa---C-GCCGCCC-GGUCgCU- -5'
8952 5' -62.8 NC_002512.2 + 45267 0.66 0.659424
Target:  5'- -cCGCCGGCGggGCGcucgcgcucgucucGCGGGUCGGaCGGa -3'
miRNA:   3'- uuGCGGUCGUa-CGC--------------CGCCCGGUC-GCU- -5'
8952 5' -62.8 NC_002512.2 + 98575 0.66 0.671975
Target:  5'- gGGCGCCu-CggGCGGCGGGUCGuccGCGc -3'
miRNA:   3'- -UUGCGGucGuaCGCCGCCCGGU---CGCu -5'
8952 5' -62.8 NC_002512.2 + 33631 0.66 0.671975
Target:  5'- -uCGCCgaGGCGagaggcGCGcGCGGGCgCGGCGGa -3'
miRNA:   3'- uuGCGG--UCGUa-----CGC-CGCCCG-GUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 12104 0.66 0.681597
Target:  5'- -cCGCCAGCcgGCcGCGaccCCGGCGAc -3'
miRNA:   3'- uuGCGGUCGuaCGcCGCcc-GGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 116880 0.66 0.671975
Target:  5'- uGugGUC-GCGgcugGCGGCGGGgCCggGGCGGg -3'
miRNA:   3'- -UugCGGuCGUa---CGCCGCCC-GG--UCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.