miRNA display CGI


Results 1 - 20 of 192 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 5' -62.8 NC_002512.2 + 216562 0.95 0.009398
Target:  5'- gAACG-CAGCAUGCGGCGGGCCAGCGAg -3'
miRNA:   3'- -UUGCgGUCGUACGCCGCCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 10481 0.79 0.114646
Target:  5'- gGGCGUgGGCGUcGCGGCGGGCCgaccAGCGGa -3'
miRNA:   3'- -UUGCGgUCGUA-CGCCGCCCGG----UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 184538 0.79 0.120463
Target:  5'- cGGgGUCAGCcgGCGGCgcGGGCCGGCGGa -3'
miRNA:   3'- -UUgCGGUCGuaCGCCG--CCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 179233 0.78 0.132927
Target:  5'- uGCGCCAGCA-GCuGGCGGGCCgugucGGUGAa -3'
miRNA:   3'- uUGCGGUCGUaCG-CCGCCCGG-----UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 97196 0.78 0.132927
Target:  5'- cGACGCCcgucuGCG-GCGGCGGGCCGGgCGGg -3'
miRNA:   3'- -UUGCGGu----CGUaCGCCGCCCGGUC-GCU- -5'
8952 5' -62.8 NC_002512.2 + 181585 0.77 0.157629
Target:  5'- uGCGgCGGCAgggGCGGCGGGUCcGCGAc -3'
miRNA:   3'- uUGCgGUCGUa--CGCCGCCCGGuCGCU- -5'
8952 5' -62.8 NC_002512.2 + 157127 0.76 0.182028
Target:  5'- cGGCGUCGGgGgucgGCGGCGGGCCcggGGCGGg -3'
miRNA:   3'- -UUGCGGUCgUa---CGCCGCCCGG---UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 120785 0.75 0.204857
Target:  5'- -cCGUCGGCGgggGCGGCGGGaCGGCGGc -3'
miRNA:   3'- uuGCGGUCGUa--CGCCGCCCgGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 136208 0.75 0.209711
Target:  5'- cGACGCCGGCggccugGUGCGcGgGGGUCAGCGu -3'
miRNA:   3'- -UUGCGGUCG------UACGC-CgCCCGGUCGCu -5'
8952 5' -62.8 NC_002512.2 + 204708 0.75 0.224869
Target:  5'- cGACGUCGGCGa-CGGCGGGCCcggGGCGGg -3'
miRNA:   3'- -UUGCGGUCGUacGCCGCCCGG---UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 33498 0.74 0.243163
Target:  5'- cGCGCCAGaCccGCGGCGucccgaagugagcccGGCCGGCGGa -3'
miRNA:   3'- uUGCGGUC-GuaCGCCGC---------------CCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 220124 0.74 0.252192
Target:  5'- -cCGCCAcGCGggGCGGCGGGuCCGGCu- -3'
miRNA:   3'- uuGCGGU-CGUa-CGCCGCCC-GGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 9216 0.74 0.252192
Target:  5'- -uCGcCCAGCAcgacGCGGCGGGCCAGgUGGc -3'
miRNA:   3'- uuGC-GGUCGUa---CGCCGCCCGGUC-GCU- -5'
8952 5' -62.8 NC_002512.2 + 116716 0.74 0.269863
Target:  5'- cGACGCCGgucGCGUcccgcccggccGCGGCGaGGCCGGCGc -3'
miRNA:   3'- -UUGCGGU---CGUA-----------CGCCGC-CCGGUCGCu -5'
8952 5' -62.8 NC_002512.2 + 155368 0.73 0.275971
Target:  5'- cGGCGCUcgaGGUcgggGCGGCGGcGCCGGCGGg -3'
miRNA:   3'- -UUGCGG---UCGua--CGCCGCC-CGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 10547 0.73 0.282189
Target:  5'- gGACGCCgGGCAgcCGGCGGGCCAcGCcGAc -3'
miRNA:   3'- -UUGCGG-UCGUacGCCGCCCGGU-CG-CU- -5'
8952 5' -62.8 NC_002512.2 + 165955 0.73 0.285973
Target:  5'- gGACGCCGGCcgcuucaccaagcUGCGGCGGGgCGGuCGGu -3'
miRNA:   3'- -UUGCGGUCGu------------ACGCCGCCCgGUC-GCU- -5'
8952 5' -62.8 NC_002512.2 + 143552 0.73 0.294957
Target:  5'- cGGCgGCCGcGCGUcuccccGCgGGCGGGCCGGCGGa -3'
miRNA:   3'- -UUG-CGGU-CGUA------CG-CCGCCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 101108 0.73 0.294957
Target:  5'- --gGCCAGCGcGCGGCGcGGCguGCGc -3'
miRNA:   3'- uugCGGUCGUaCGCCGC-CCGguCGCu -5'
8952 5' -62.8 NC_002512.2 + 157085 0.73 0.301508
Target:  5'- -uCGCCGGCGcccaCGGCGGGCCcgucccGGCGAc -3'
miRNA:   3'- uuGCGGUCGUac--GCCGCCCGG------UCGCU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.