miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 5' -62.8 NC_002512.2 + 136 0.7 0.455518
Target:  5'- aAACGCCGGgGaGCcgGGCGGggcGCCGGCGGa -3'
miRNA:   3'- -UUGCGGUCgUaCG--CCGCC---CGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 2037 0.68 0.518624
Target:  5'- gAGCGaCAGCAgggugaucgGCuGCGGcGCCAGCGGg -3'
miRNA:   3'- -UUGCgGUCGUa--------CGcCGCC-CGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 2802 0.68 0.537303
Target:  5'- --gGCCGGCGgcCGGCGGGacCCGGCGc -3'
miRNA:   3'- uugCGGUCGUacGCCGCCC--GGUCGCu -5'
8952 5' -62.8 NC_002512.2 + 3058 0.71 0.380926
Target:  5'- uGACGgCGGCGgacGCGGCGGcGgCGGCGGc -3'
miRNA:   3'- -UUGCgGUCGUa--CGCCGCC-CgGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 4869 0.69 0.482085
Target:  5'- -uCGCC-GCGUGCGGCGccGGCUggaggagcGGCGAc -3'
miRNA:   3'- uuGCGGuCGUACGCCGC--CCGG--------UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 4925 0.67 0.584908
Target:  5'- -cCGcCCAGCGgguaGaCGGCGGaGCCgAGCGAc -3'
miRNA:   3'- uuGC-GGUCGUa---C-GCCGCC-CGG-UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 5187 0.69 0.464287
Target:  5'- cGGCcCCAGCAggGCGggcaggaccGCGGGCCAGCcGAc -3'
miRNA:   3'- -UUGcGGUCGUa-CGC---------CGCCCGGUCG-CU- -5'
8952 5' -62.8 NC_002512.2 + 7368 0.68 0.565736
Target:  5'- cGACGgCGGCc-GCGGCGGGCggccaGGCGc -3'
miRNA:   3'- -UUGCgGUCGuaCGCCGCCCGg----UCGCu -5'
8952 5' -62.8 NC_002512.2 + 8919 0.67 0.622602
Target:  5'- --gGCCAGg--GCGGCcucggccGGGUCGGCGAu -3'
miRNA:   3'- uugCGGUCguaCGCCG-------CCCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 9064 0.66 0.642963
Target:  5'- cGACGagcaCGGCcaGCGGCGGGaCCAcgaGCGGg -3'
miRNA:   3'- -UUGCg---GUCGuaCGCCGCCC-GGU---CGCU- -5'
8952 5' -62.8 NC_002512.2 + 9216 0.74 0.252192
Target:  5'- -uCGcCCAGCAcgacGCGGCGGGCCAGgUGGc -3'
miRNA:   3'- uuGC-GGUCGUa---CGCCGCCCGGUC-GCU- -5'
8952 5' -62.8 NC_002512.2 + 9464 0.69 0.500207
Target:  5'- cGGCgGCUGGCcguagGCgGGCGGGCCcGCGAg -3'
miRNA:   3'- -UUG-CGGUCGua---CG-CCGCCCGGuCGCU- -5'
8952 5' -62.8 NC_002512.2 + 9515 0.66 0.691183
Target:  5'- cGGCcCCAGCAcgGCGGCGGcgGCCA-CGGc -3'
miRNA:   3'- -UUGcGGUCGUa-CGCCGCC--CGGUcGCU- -5'
8952 5' -62.8 NC_002512.2 + 10481 0.79 0.114646
Target:  5'- gGGCGUgGGCGUcGCGGCGGGCCgaccAGCGGa -3'
miRNA:   3'- -UUGCGgUCGUA-CGCCGCCCGG----UCGCU- -5'
8952 5' -62.8 NC_002512.2 + 10547 0.73 0.282189
Target:  5'- gGACGCCgGGCAgcCGGCGGGCCAcGCcGAc -3'
miRNA:   3'- -UUGCGG-UCGUacGCCGCCCGGU-CG-CU- -5'
8952 5' -62.8 NC_002512.2 + 11445 0.66 0.671975
Target:  5'- gGACGCC-GCGgaCGG-GGGCCGGgGAa -3'
miRNA:   3'- -UUGCGGuCGUacGCCgCCCGGUCgCU- -5'
8952 5' -62.8 NC_002512.2 + 12104 0.66 0.681597
Target:  5'- -cCGCCAGCcgGCcGCGaccCCGGCGAc -3'
miRNA:   3'- uuGCGGUCGuaCGcCGCcc-GGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 12390 0.68 0.537303
Target:  5'- -uCGCCuucgGGCGgcgGCGGCGGcGCCGggaucGCGAg -3'
miRNA:   3'- uuGCGG----UCGUa--CGCCGCC-CGGU-----CGCU- -5'
8952 5' -62.8 NC_002512.2 + 17432 0.66 0.691183
Target:  5'- gGAUGCCcuccucgcGGCGgucGCGGCcGGCCGGCc- -3'
miRNA:   3'- -UUGCGG--------UCGUa--CGCCGcCCGGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 17516 0.71 0.365492
Target:  5'- cGACGUCGGCGU-CGGCGuaggcGGCCAGCu- -3'
miRNA:   3'- -UUGCGGUCGUAcGCCGC-----CCGGUCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.