miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8952 5' -62.8 NC_002512.2 + 122794 0.7 0.413072
Target:  5'- gGGCGCCgGGCccugGCGGCGGGuccccuacguCCAGCGc -3'
miRNA:   3'- -UUGCGG-UCGua--CGCCGCCC----------GGUCGCu -5'
8952 5' -62.8 NC_002512.2 + 54237 0.72 0.328125
Target:  5'- aGACGCacucgcacguccgCAGCGgcaggGCGGCGGcGUCGGCGAc -3'
miRNA:   3'- -UUGCG-------------GUCGUa----CGCCGCC-CGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 130150 0.72 0.33594
Target:  5'- --gGCCgcggGGCccgGCGGCGGGCCGGCc- -3'
miRNA:   3'- uugCGG----UCGua-CGCCGCCCGGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 83815 0.72 0.343162
Target:  5'- cGCGCCGGCGgcgGCGGCuccGGGCCcgggucgucgcaGGCGc -3'
miRNA:   3'- uUGCGGUCGUa--CGCCG---CCCGG------------UCGCu -5'
8952 5' -62.8 NC_002512.2 + 82336 0.72 0.350495
Target:  5'- -cCGCCccGGCGgguaGCGGUGGGCguGCGGg -3'
miRNA:   3'- uuGCGG--UCGUa---CGCCGCCCGguCGCU- -5'
8952 5' -62.8 NC_002512.2 + 42702 0.71 0.364732
Target:  5'- cGGCGCCGGCAcGCcgaagauGGCGGGCCA-CGu -3'
miRNA:   3'- -UUGCGGUCGUaCG-------CCGCCCGGUcGCu -5'
8952 5' -62.8 NC_002512.2 + 17516 0.71 0.365492
Target:  5'- cGACGUCGGCGU-CGGCGuaggcGGCCAGCu- -3'
miRNA:   3'- -UUGCGGUCGUAcGCCGC-----CCGGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 107918 0.71 0.373155
Target:  5'- -cCGCCGGCggGCGGggaccCGGGUCAGCu- -3'
miRNA:   3'- uuGCGGUCGuaCGCC-----GCCCGGUCGcu -5'
8952 5' -62.8 NC_002512.2 + 3058 0.71 0.380926
Target:  5'- uGACGgCGGCGgacGCGGCGGcGgCGGCGGc -3'
miRNA:   3'- -UUGCgGUCGUa--CGCCGCC-CgGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 74188 0.72 0.321832
Target:  5'- aGGCGCCGGCAcaggGCGGCgacguccguGGGCUcGCGGu -3'
miRNA:   3'- -UUGCGGUCGUa---CGCCG---------CCCGGuCGCU- -5'
8952 5' -62.8 NC_002512.2 + 45511 0.73 0.308171
Target:  5'- cACGCCGaaagcGCccGCGGCGGGCggCGGCGGc -3'
miRNA:   3'- uUGCGGU-----CGuaCGCCGCCCG--GUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 101108 0.73 0.294957
Target:  5'- --gGCCAGCGcGCGGCGcGGCguGCGc -3'
miRNA:   3'- uugCGGUCGUaCGCCGC-CCGguCGCu -5'
8952 5' -62.8 NC_002512.2 + 97196 0.78 0.132927
Target:  5'- cGACGCCcgucuGCG-GCGGCGGGCCGGgCGGg -3'
miRNA:   3'- -UUGCGGu----CGUaCGCCGCCCGGUC-GCU- -5'
8952 5' -62.8 NC_002512.2 + 120785 0.75 0.204857
Target:  5'- -cCGUCGGCGgggGCGGCGGGaCGGCGGc -3'
miRNA:   3'- uuGCGGUCGUa--CGCCGCCCgGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 136208 0.75 0.209711
Target:  5'- cGACGCCGGCggccugGUGCGcGgGGGUCAGCGu -3'
miRNA:   3'- -UUGCGGUCG------UACGC-CgCCCGGUCGCu -5'
8952 5' -62.8 NC_002512.2 + 33498 0.74 0.243163
Target:  5'- cGCGCCAGaCccGCGGCGucccgaagugagcccGGCCGGCGGa -3'
miRNA:   3'- uUGCGGUC-GuaCGCCGC---------------CCGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 9216 0.74 0.252192
Target:  5'- -uCGcCCAGCAcgacGCGGCGGGCCAGgUGGc -3'
miRNA:   3'- uuGC-GGUCGUa---CGCCGCCCGGUC-GCU- -5'
8952 5' -62.8 NC_002512.2 + 116716 0.74 0.269863
Target:  5'- cGACGCCGgucGCGUcccgcccggccGCGGCGaGGCCGGCGc -3'
miRNA:   3'- -UUGCGGU---CGUA-----------CGCCGC-CCGGUCGCu -5'
8952 5' -62.8 NC_002512.2 + 155368 0.73 0.275971
Target:  5'- cGGCGCUcgaGGUcgggGCGGCGGcGCCGGCGGg -3'
miRNA:   3'- -UUGCGG---UCGua--CGCCGCC-CGGUCGCU- -5'
8952 5' -62.8 NC_002512.2 + 10547 0.73 0.282189
Target:  5'- gGACGCCgGGCAgcCGGCGGGCCAcGCcGAc -3'
miRNA:   3'- -UUGCGG-UCGUacGCCGCCCGGU-CG-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.