Results 21 - 40 of 192 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8952 | 5' | -62.8 | NC_002512.2 | + | 132572 | 0.66 | 0.671975 |
Target: 5'- cGACcCCGGCGggcGCGGCcagGGGuUCGGCGAg -3' miRNA: 3'- -UUGcGGUCGUa--CGCCG---CCC-GGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 190072 | 0.66 | 0.671975 |
Target: 5'- --aGCUGGCc-GCGGCcGGUCAGCGGg -3' miRNA: 3'- uugCGGUCGuaCGCCGcCCGGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 25937 | 0.66 | 0.671011 |
Target: 5'- uGCGUCGGCcgGgGGCcacgaGGGCCucguaguAGCGGa -3' miRNA: 3'- uUGCGGUCGuaCgCCG-----CCCGG-------UCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 104276 | 0.66 | 0.669083 |
Target: 5'- -cCGCCGGCGUcuuucucgcguccgGCGGCGGGa-GGCu- -3' miRNA: 3'- uuGCGGUCGUA--------------CGCCGCCCggUCGcu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 24281 | 0.66 | 0.666188 |
Target: 5'- cGGCGaCGGCAUcccgcgggacaGCGGCGGGgcgaacugcggucccCCGGCGGu -3' miRNA: 3'- -UUGCgGUCGUA-----------CGCCGCCC---------------GGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 18140 | 0.66 | 0.662324 |
Target: 5'- cAGCGCCcgGGCc-GCGucGCGGGCCAGgcCGAg -3' miRNA: 3'- -UUGCGG--UCGuaCGC--CGCCCGGUC--GCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 113181 | 0.66 | 0.662324 |
Target: 5'- -gUGCCGgggcuGCGUuguuccagaGCGGCGucGGCCAGCGGc -3' miRNA: 3'- uuGCGGU-----CGUA---------CGCCGC--CCGGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 128188 | 0.66 | 0.662324 |
Target: 5'- -uCGCCgAGCGggccGcCGGCGGGaCCGGgGAc -3' miRNA: 3'- uuGCGG-UCGUa---C-GCCGCCC-GGUCgCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 130213 | 0.66 | 0.661357 |
Target: 5'- --gGCCAGUGguccucgGCGGCGGGgaaccucugggccCCGGCGu -3' miRNA: 3'- uugCGGUCGUa------CGCCGCCC-------------GGUCGCu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 21148 | 0.66 | 0.661357 |
Target: 5'- gGGCGacugccuCCGGUcgGCGGCGcucccgaucuGGUCGGCGAg -3' miRNA: 3'- -UUGC-------GGUCGuaCGCCGC----------CCGGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 45267 | 0.66 | 0.659424 |
Target: 5'- -cCGCCGGCGggGCGcucgcgcucgucucGCGGGUCGGaCGGa -3' miRNA: 3'- uuGCGGUCGUa-CGC--------------CGCCCGGUC-GCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 189890 | 0.66 | 0.652651 |
Target: 5'- aGACGgCGGCGgcgaggacgGCGGCGaGGaCGGCGGc -3' miRNA: 3'- -UUGCgGUCGUa--------CGCCGC-CCgGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 152947 | 0.66 | 0.652651 |
Target: 5'- --gGUCAGCGggaGCGGUccccggucGGGUCGGCGGg -3' miRNA: 3'- uugCGGUCGUa--CGCCG--------CCCGGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 22942 | 0.66 | 0.652651 |
Target: 5'- -uCGCUgaagGGCAcGCGGCGGuguGCCAGCc- -3' miRNA: 3'- uuGCGG----UCGUaCGCCGCC---CGGUCGcu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 87438 | 0.66 | 0.652651 |
Target: 5'- -uCGUCAGCGUGCGGggauccgaucuCGGGaCgAGCGu -3' miRNA: 3'- uuGCGGUCGUACGCC-----------GCCC-GgUCGCu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 126505 | 0.66 | 0.652651 |
Target: 5'- gAGCGCgAGCGccuCGGCGGcuCCGGCGGc -3' miRNA: 3'- -UUGCGgUCGUac-GCCGCCc-GGUCGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 224805 | 0.66 | 0.643932 |
Target: 5'- cGACGCCGGCGacgacgaccaacgccGCgGGCGGGCUGGaCGc -3' miRNA: 3'- -UUGCGGUCGUa--------------CG-CCGCCCGGUC-GCu -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 9064 | 0.66 | 0.642963 |
Target: 5'- cGACGagcaCGGCcaGCGGCGGGaCCAcgaGCGGg -3' miRNA: 3'- -UUGCg---GUCGuaCGCCGCCC-GGU---CGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 113724 | 0.66 | 0.642963 |
Target: 5'- cGACGCgGGCG-GCGaucuGCGGGCCGaggugcGCGGu -3' miRNA: 3'- -UUGCGgUCGUaCGC----CGCCCGGU------CGCU- -5' |
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8952 | 5' | -62.8 | NC_002512.2 | + | 129097 | 0.66 | 0.642963 |
Target: 5'- gGACgGgCGGCGucUGCGGCGGGCgGuccucuGCGAc -3' miRNA: 3'- -UUG-CgGUCGU--ACGCCGCCCGgU------CGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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