miRNA display CGI


Results 1 - 20 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 3' -66.3 NC_002512.2 + 214421 1.07 0.001021
Target:  5'- gCGCCGCGCCCGAGGACCGCGUCCCCGu -3'
miRNA:   3'- -GCGGCGCGGGCUCCUGGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 135392 0.84 0.045364
Target:  5'- aGaCGCGCCCGAcGACUGCGUCCCCGg -3'
miRNA:   3'- gCgGCGCGGGCUcCUGGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 208674 0.84 0.047629
Target:  5'- gGCgGCGuCCCGGGGGCCGCuGUCCCUGg -3'
miRNA:   3'- gCGgCGC-GGGCUCCUGGCG-CAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 221129 0.81 0.06849
Target:  5'- cCGaCgGCG-CUGAGGACCGCGUCCCCGu -3'
miRNA:   3'- -GC-GgCGCgGGCUCCUGGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 193904 0.79 0.095711
Target:  5'- uCGCCGCGgUCGGcGGAUCGCGUCCCgGa -3'
miRNA:   3'- -GCGGCGCgGGCU-CCUGGCGCAGGGgC- -5'
8953 3' -66.3 NC_002512.2 + 186810 0.79 0.095711
Target:  5'- uCGCCGCGCCCcGGGACCG-GUgCCUCGg -3'
miRNA:   3'- -GCGGCGCGGGcUCCUGGCgCA-GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 106203 0.79 0.102754
Target:  5'- aCGCCcCGCCgCGAcGGACCGCuUCCCCGa -3'
miRNA:   3'- -GCGGcGCGG-GCU-CCUGGCGcAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 105711 0.79 0.105208
Target:  5'- aCGCCGCGCUCGGGGuCCGC-UCCCa- -3'
miRNA:   3'- -GCGGCGCGGGCUCCuGGCGcAGGGgc -5'
8953 3' -66.3 NC_002512.2 + 223533 0.78 0.121126
Target:  5'- gGCaCGCGCCCGcGGcCCGCGgCCCCGc -3'
miRNA:   3'- gCG-GCGCGGGCuCCuGGCGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 91987 0.78 0.123988
Target:  5'- gGCCGCGUCCGGGucucCCGCGUCgCCGg -3'
miRNA:   3'- gCGGCGCGGGCUCcu--GGCGCAGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 218923 0.77 0.126617
Target:  5'- uGCCGCugcccugGCCCGAGGgcGCCgGCGUCCUCGu -3'
miRNA:   3'- gCGGCG-------CGGGCUCC--UGG-CGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 124475 0.77 0.126617
Target:  5'- aGCCgGCGCCacgacaacggcuaCGAGGugCGCuGUCCCCGg -3'
miRNA:   3'- gCGG-CGCGG-------------GCUCCugGCG-CAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 201823 0.77 0.1299
Target:  5'- cCGCCGCGCCCGGGGGCUcCuUCCgCGg -3'
miRNA:   3'- -GCGGCGCGGGCUCCUGGcGcAGGgGC- -5'
8953 3' -66.3 NC_002512.2 + 83786 0.77 0.132954
Target:  5'- cCGCCGcCGCcgCCGAGGACCGCGUCgggcgcgCCGg -3'
miRNA:   3'- -GCGGC-GCG--GGCUCCUGGCGCAGg------GGC- -5'
8953 3' -66.3 NC_002512.2 + 24237 0.77 0.142513
Target:  5'- gCGUCGgGCCCGccGACgGCGUCCCCc -3'
miRNA:   3'- -GCGGCgCGGGCucCUGgCGCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 126794 0.77 0.145837
Target:  5'- uGCCGCGCCCGuccccGGGAUCGCcUCCCg- -3'
miRNA:   3'- gCGGCGCGGGC-----UCCUGGCGcAGGGgc -5'
8953 3' -66.3 NC_002512.2 + 205017 0.76 0.149232
Target:  5'- aCGaCGCGCCuCGgucGGGGCCGCGUCCgCCGc -3'
miRNA:   3'- -GCgGCGCGG-GC---UCCUGGCGCAGG-GGC- -5'
8953 3' -66.3 NC_002512.2 + 61704 0.76 0.156237
Target:  5'- gCGUgCGUGUCCGuucuuucgcgGGGGCCGCGUCCCCu -3'
miRNA:   3'- -GCG-GCGCGGGC----------UCCUGGCGCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 7447 0.76 0.157674
Target:  5'- gGCCGCgGCCCGGGGgaaGCCGCGgcgcggcugccggcCCCCGc -3'
miRNA:   3'- gCGGCG-CGGGCUCC---UGGCGCa-------------GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 36025 0.75 0.179068
Target:  5'- cCGCCGCGUCCGAuguacuGGGCagaGCGgggacgCCCCGa -3'
miRNA:   3'- -GCGGCGCGGGCU------CCUGg--CGCa-----GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.