miRNA display CGI


Results 1 - 20 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 3' -66.3 NC_002512.2 + 1670 0.71 0.307987
Target:  5'- cCGCCGUcucGCCCGGccucGACCGCGgCCUCGa -3'
miRNA:   3'- -GCGGCG---CGGGCUc---CUGGCGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 1859 0.67 0.55867
Target:  5'- uCGCCGcCGUCCGGucgccccucGucCCGCGUCCCg- -3'
miRNA:   3'- -GCGGC-GCGGGCU---------CcuGGCGCAGGGgc -5'
8953 3' -66.3 NC_002512.2 + 1965 0.67 0.549685
Target:  5'- cCGCCgGCGUCgGAGGcGgCGCGUCCgucuCCGc -3'
miRNA:   3'- -GCGG-CGCGGgCUCC-UgGCGCAGG----GGC- -5'
8953 3' -66.3 NC_002512.2 + 2147 0.66 0.566791
Target:  5'- uCGCCucccccgucacgGCGgUCGAGGAgucggggaccguaCCGCGcCCCCGc -3'
miRNA:   3'- -GCGG------------CGCgGGCUCCU-------------GGCGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 2650 0.67 0.523019
Target:  5'- uGCC-CGCCCGuccGCCGCGcCuCCCGg -3'
miRNA:   3'- gCGGcGCGGGCuccUGGCGCaG-GGGC- -5'
8953 3' -66.3 NC_002512.2 + 2854 0.68 0.488277
Target:  5'- aGCUGCGgCaCGAGcuugggcaGACCGaacuCGUCCCCGg -3'
miRNA:   3'- gCGGCGCgG-GCUC--------CUGGC----GCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 3092 0.68 0.479759
Target:  5'- gGCgGCGgCCGA-GACCacgGCGUCgCCCGa -3'
miRNA:   3'- gCGgCGCgGGCUcCUGG---CGCAG-GGGC- -5'
8953 3' -66.3 NC_002512.2 + 3306 0.71 0.341019
Target:  5'- gGCCGCGCCCuccuggccGGGGAgCGCGagCCgGa -3'
miRNA:   3'- gCGGCGCGGG--------CUCCUgGCGCagGGgC- -5'
8953 3' -66.3 NC_002512.2 + 3671 0.68 0.496865
Target:  5'- gGCCGacgGUCCgGAGGuccuCC-CGUCCCCGa -3'
miRNA:   3'- gCGGCg--CGGG-CUCCu---GGcGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 4365 0.71 0.320899
Target:  5'- cCGCCGUcccguccgcgaaGCCCG-GGAcccCCGCGgcggCCCCGu -3'
miRNA:   3'- -GCGGCG------------CGGGCuCCU---GGCGCa---GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 4449 0.68 0.462947
Target:  5'- uGCCGgGCgCGGGGGuCgGCGUcggCCCCa -3'
miRNA:   3'- gCGGCgCGgGCUCCU-GgCGCA---GGGGc -5'
8953 3' -66.3 NC_002512.2 + 5164 0.66 0.576757
Target:  5'- aGCgGCGCgaCCG-GGGCgGCGgccggCCCCa -3'
miRNA:   3'- gCGgCGCG--GGCuCCUGgCGCa----GGGGc -5'
8953 3' -66.3 NC_002512.2 + 5262 0.74 0.227162
Target:  5'- gGCCGCggcggcgaccccgaGCCCGGucGGcACCGCGUCCCgCGc -3'
miRNA:   3'- gCGGCG--------------CGGGCU--CC-UGGCGCAGGG-GC- -5'
8953 3' -66.3 NC_002512.2 + 5513 0.68 0.496865
Target:  5'- gGUCGCGaggucccggaCCGAGGucucccgcCCGCGaCCCCGg -3'
miRNA:   3'- gCGGCGCg---------GGCUCCu-------GGCGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 6076 0.71 0.341019
Target:  5'- cCGUCGuCGuCCCGGcGGucgccGCCGaCGUCCCCGg -3'
miRNA:   3'- -GCGGC-GC-GGGCU-CC-----UGGC-GCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 6675 0.68 0.50552
Target:  5'- gGCCgggacGCGCuCCG-GGACgC-CGUCCCCGu -3'
miRNA:   3'- gCGG-----CGCG-GGCuCCUG-GcGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 6862 0.68 0.496865
Target:  5'- uCGCCGgagugggcgaCGaCCCGucccuGGGCCGUGccgcUCCCCGg -3'
miRNA:   3'- -GCGGC----------GC-GGGCu----CCUGGCGC----AGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 7261 0.69 0.438325
Target:  5'- aGCgGCGUCCGucGGGAUcgggCGCGaggCCCCGg -3'
miRNA:   3'- gCGgCGCGGGC--UCCUG----GCGCa--GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 7447 0.76 0.157674
Target:  5'- gGCCGCgGCCCGGGGgaaGCCGCGgcgcggcugccggcCCCCGc -3'
miRNA:   3'- gCGGCG-CGGGCUCC---UGGCGCa-------------GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 7711 0.68 0.462947
Target:  5'- gGCCGCgGCCCGggaguaggcgucGGGAuaGCGgUCCUCGg -3'
miRNA:   3'- gCGGCG-CGGGC------------UCCUggCGC-AGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.