miRNA display CGI


Results 1 - 20 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 3' -66.3 NC_002512.2 + 135262 0.73 0.238834
Target:  5'- gCGCCGCGCUCGAcgaggccuGGGCCGCcugcuucgggCCCCa -3'
miRNA:   3'- -GCGGCGCGGGCU--------CCUGGCGca--------GGGGc -5'
8953 3' -66.3 NC_002512.2 + 84323 0.75 0.195892
Target:  5'- gCGUCGCGCgCCGcAGcGucGCCGCGUCCUCGa -3'
miRNA:   3'- -GCGGCGCG-GGC-UC-C--UGGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 126416 0.75 0.195892
Target:  5'- cCGCCGCcgagaCCCGA--GCCGCGUCCUCGg -3'
miRNA:   3'- -GCGGCGc----GGGCUccUGGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 15228 0.74 0.208015
Target:  5'- uCGCCgagGCGCCgggaggagagacugCGAGGcggcCCGCGUCCCCGc -3'
miRNA:   3'- -GCGG---CGCGG--------------GCUCCu---GGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 18526 0.74 0.218367
Target:  5'- uGCCGCGCCgGGcGGucaggccGCgCGCGUCCCCc -3'
miRNA:   3'- gCGGCGCGGgCU-CC-------UG-GCGCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 5262 0.74 0.227162
Target:  5'- gGCCGCggcggcgaccccgaGCCCGGucGGcACCGCGUCCCgCGc -3'
miRNA:   3'- gCGGCG--------------CGGGCU--CC-UGGCGCAGGG-GC- -5'
8953 3' -66.3 NC_002512.2 + 131060 0.74 0.228657
Target:  5'- gCGCCGCGCCgGAGGccgauCCGuCG-CUCCGg -3'
miRNA:   3'- -GCGGCGCGGgCUCCu----GGC-GCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 35172 0.73 0.233699
Target:  5'- aGCCGCGCCCcccu-CCGCGUCCuCCa -3'
miRNA:   3'- gCGGCGCGGGcuccuGGCGCAGG-GGc -5'
8953 3' -66.3 NC_002512.2 + 138009 0.73 0.233699
Target:  5'- gCGCCGcCGCCCGcgccGGACgGCGgCCUCGg -3'
miRNA:   3'- -GCGGC-GCGGGCu---CCUGgCGCaGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 105182 0.75 0.195892
Target:  5'- uGCaCGCGCCCcAGGACgGCGUgCgCCCGg -3'
miRNA:   3'- gCG-GCGCGGGcUCCUGgCGCA-G-GGGC- -5'
8953 3' -66.3 NC_002512.2 + 137072 0.75 0.191561
Target:  5'- gCGCCGCGCCCGggaacAGGcCCGCGgugugCgCCCa -3'
miRNA:   3'- -GCGGCGCGGGC-----UCCuGGCGCa----G-GGGc -5'
8953 3' -66.3 NC_002512.2 + 57203 0.75 0.187314
Target:  5'- gGUCGCGCaggacggagaCGAGGGCCgagacgcggGCGUCCCCGc -3'
miRNA:   3'- gCGGCGCGg---------GCUCCUGG---------CGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 105711 0.79 0.105208
Target:  5'- aCGCCGCGCUCGGGGuCCGC-UCCCa- -3'
miRNA:   3'- -GCGGCGCGGGCUCCuGGCGcAGGGgc -5'
8953 3' -66.3 NC_002512.2 + 91987 0.78 0.123988
Target:  5'- gGCCGCGUCCGGGucucCCGCGUCgCCGg -3'
miRNA:   3'- gCGGCGCGGGCUCcu--GGCGCAGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 83786 0.77 0.132954
Target:  5'- cCGCCGcCGCcgCCGAGGACCGCGUCgggcgcgCCGg -3'
miRNA:   3'- -GCGGC-GCG--GGCUCCUGGCGCAGg------GGC- -5'
8953 3' -66.3 NC_002512.2 + 24237 0.77 0.142513
Target:  5'- gCGUCGgGCCCGccGACgGCGUCCCCc -3'
miRNA:   3'- -GCGGCgCGGGCucCUGgCGCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 61704 0.76 0.156237
Target:  5'- gCGUgCGUGUCCGuucuuucgcgGGGGCCGCGUCCCCu -3'
miRNA:   3'- -GCG-GCGCGGGC----------UCCUGGCGCAGGGGc -5'
8953 3' -66.3 NC_002512.2 + 7447 0.76 0.157674
Target:  5'- gGCCGCgGCCCGGGGgaaGCCGCGgcgcggcugccggcCCCCGc -3'
miRNA:   3'- gCGGCG-CGGGCUCC---UGGCGCa-------------GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 36025 0.75 0.179068
Target:  5'- cCGCCGCGUCCGAuguacuGGGCagaGCGgggacgCCCCGa -3'
miRNA:   3'- -GCGGCGCGGGCU------CCUGg--CGCa-----GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 83153 0.75 0.18315
Target:  5'- uCGUCGgGCCCGGcGGCCGCGgccgccgCCCCGc -3'
miRNA:   3'- -GCGGCgCGGGCUcCUGGCGCa------GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.