miRNA display CGI


Results 21 - 40 of 451 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 3' -66.3 NC_002512.2 + 193813 0.66 0.616941
Target:  5'- gGUCGCGCCgcuuCGGGGuCgGCGauaaaagucggggcgUCCCCGc -3'
miRNA:   3'- gCGGCGCGG----GCUCCuGgCGC---------------AGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 216444 0.66 0.616941
Target:  5'- cCGCCGCccucuccaucgagaaGCCC-AGGuaGCCgGCGUCCCa- -3'
miRNA:   3'- -GCGGCG---------------CGGGcUCC--UGG-CGCAGGGgc -5'
8953 3' -66.3 NC_002512.2 + 95252 0.66 0.613273
Target:  5'- ---gGCGUCCgGAGGGCCGCGcggCUCCu -3'
miRNA:   3'- gcggCGCGGG-CUCCUGGCGCa--GGGGc -5'
8953 3' -66.3 NC_002512.2 + 225033 0.66 0.613273
Target:  5'- aCGCgGCGaacCCCGcgauGGCCGCGcUCCUCGg -3'
miRNA:   3'- -GCGgCGC---GGGCuc--CUGGCGC-AGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 85576 0.66 0.613273
Target:  5'- aGCgggaGCGgCCGGGaGAgCGCGUCCgCGu -3'
miRNA:   3'- gCGg---CGCgGGCUC-CUgGCGCAGGgGC- -5'
8953 3' -66.3 NC_002512.2 + 194558 0.66 0.613273
Target:  5'- -aCCGC-CCCGGGaaGGCCGUG-CCCCu -3'
miRNA:   3'- gcGGCGcGGGCUC--CUGGCGCaGGGGc -5'
8953 3' -66.3 NC_002512.2 + 133588 0.66 0.613273
Target:  5'- gGCC-CGCCCGcggcggcGGcCCGCGgcagCCCCc -3'
miRNA:   3'- gCGGcGCGGGCu------CCuGGCGCa---GGGGc -5'
8953 3' -66.3 NC_002512.2 + 142687 0.66 0.613273
Target:  5'- gGCCGUcaCCGAGcacucgaacACCGCGUCUCCGc -3'
miRNA:   3'- gCGGCGcgGGCUCc--------UGGCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 96643 0.66 0.613273
Target:  5'- -aCCGCGaCCGGGGcGCCGCcgcccucccGUCCUCGc -3'
miRNA:   3'- gcGGCGCgGGCUCC-UGGCG---------CAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 70878 0.66 0.613273
Target:  5'- cCGCCcgGCGCggacgCCGGGGccGCCGCcuccgCCCCGc -3'
miRNA:   3'- -GCGG--CGCG-----GGCUCC--UGGCGca---GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 103717 0.66 0.613273
Target:  5'- gCGCCGCcaugauCCUGAaccGGACCGCGgcgaUCCUGa -3'
miRNA:   3'- -GCGGCGc-----GGGCU---CCUGGCGCa---GGGGC- -5'
8953 3' -66.3 NC_002512.2 + 217742 0.66 0.613273
Target:  5'- gGaCCGCGaCuuGAagaagaaccccGGGCC-CGUCCCCGu -3'
miRNA:   3'- gC-GGCGC-GggCU-----------CCUGGcGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 131669 0.66 0.613273
Target:  5'- aGCaggaGgGCCgCGAGGGCgGUGagCCCGg -3'
miRNA:   3'- gCGg---CgCGG-GCUCCUGgCGCagGGGC- -5'
8953 3' -66.3 NC_002512.2 + 13726 0.66 0.613273
Target:  5'- aCGCgGgaGCCUGAGGGgCGCGaCgCCGg -3'
miRNA:   3'- -GCGgCg-CGGGCUCCUgGCGCaGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 166461 0.66 0.613273
Target:  5'- gCGCCGgGCUCGAGGGCggggacgGCGggaCCgCGg -3'
miRNA:   3'- -GCGGCgCGGGCUCCUGg------CGCa--GGgGC- -5'
8953 3' -66.3 NC_002512.2 + 110525 0.66 0.612357
Target:  5'- gCGCCGCGagCGAGucgccguGACCgGCGUUUCCGc -3'
miRNA:   3'- -GCGGCGCggGCUC-------CUGG-CGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 123134 0.66 0.610524
Target:  5'- gGCCGU-CCCGGGGgacggggcggcggcGCCGCGaUCgCCGc -3'
miRNA:   3'- gCGGCGcGGGCUCC--------------UGGCGC-AGgGGC- -5'
8953 3' -66.3 NC_002512.2 + 162403 0.66 0.604114
Target:  5'- aCGuuGCGUUCGaAGuGAauGUGUCCCCGc -3'
miRNA:   3'- -GCggCGCGGGC-UC-CUggCGCAGGGGC- -5'
8953 3' -66.3 NC_002512.2 + 86663 0.66 0.604114
Target:  5'- gGCCGCGUCCGAgcGGACgGCG-CgCg- -3'
miRNA:   3'- gCGGCGCGGGCU--CCUGgCGCaGgGgc -5'
8953 3' -66.3 NC_002512.2 + 121336 0.66 0.604114
Target:  5'- gGUCGgaagGCCCGGcGGACCuucuccgccgucGgGUCCCCGg -3'
miRNA:   3'- gCGGCg---CGGGCU-CCUGG------------CgCAGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.