miRNA display CGI


Results 61 - 73 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 5' -57.7 NC_002512.2 + 166213 0.66 0.892033
Target:  5'- cGGCGAGGA--GGGCCG-CgcgcgcguggggaagUACUGCg- -3'
miRNA:   3'- -CCGCUCCUgcUCCGGCaG---------------AUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 117021 0.66 0.889429
Target:  5'- gGGCcgGAGGACGcGGCCaUCgagcuguucggGCUGCUg -3'
miRNA:   3'- -CCG--CUCCUGCuCCGGcAGa----------UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 200369 0.66 0.889429
Target:  5'- gGGCGGGGGgugaGGGGCgGgg-GCUGCa- -3'
miRNA:   3'- -CCGCUCCUg---CUCCGgCagaUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 199505 0.67 0.875902
Target:  5'- cGCGAGGAucagguCGAGGUCGUCgg--GCg- -3'
miRNA:   3'- cCGCUCCU------GCUCCGGCAGaugaCGaa -5'
8953 5' -57.7 NC_002512.2 + 145498 0.67 0.875902
Target:  5'- cGCaGAGGACGcuGCCGgg-GCUGCUc -3'
miRNA:   3'- cCG-CUCCUGCucCGGCagaUGACGAa -5'
8953 5' -57.7 NC_002512.2 + 190214 0.67 0.86156
Target:  5'- cGGCGcggucguccGGGACGGccaCGUCUGCUGCg- -3'
miRNA:   3'- -CCGC---------UCCUGCUccgGCAGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 213518 0.68 0.830599
Target:  5'- gGGCGucguccGGGuCGGGGUgcccucggagCGUCUGCUGCg- -3'
miRNA:   3'- -CCGC------UCCuGCUCCG----------GCAGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 212166 0.68 0.814079
Target:  5'- cGGCG-GGACGgcuGGGCCGUCcagGC-GCg- -3'
miRNA:   3'- -CCGCuCCUGC---UCCGGCAGa--UGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 167154 0.68 0.796941
Target:  5'- cGGCGuGccccGCGAGGCCGUCgaccgcgacgcGCUGCg- -3'
miRNA:   3'- -CCGCuCc---UGCUCCGGCAGa----------UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 106943 0.68 0.796941
Target:  5'- cGGUGAaGACGAGGCCGaagUUGCaGCg- -3'
miRNA:   3'- -CCGCUcCUGCUCCGGCa--GAUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 90568 0.68 0.796941
Target:  5'- gGGCGAGGGCGAcGGCCccgGUCUccuucccccgggGCggGCg- -3'
miRNA:   3'- -CCGCUCCUGCU-CCGG---CAGA------------UGa-CGaa -5'
8953 5' -57.7 NC_002512.2 + 95700 0.68 0.795195
Target:  5'- cGGCGGGGACGggGGGCCGggaggggaagACgGCUc -3'
miRNA:   3'- -CCGCUCCUGC--UCCGGCaga-------UGaCGAa -5'
8953 5' -57.7 NC_002512.2 + 197178 0.66 0.920031
Target:  5'- cGCGccucuucguccucauGGAcccgcuCGGGGCCGUCUACgGCUUc -3'
miRNA:   3'- cCGCu--------------CCU------GCUCCGGCAGAUGaCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.