miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8953 5' -57.7 NC_002512.2 + 214455 1.07 0.004041
Target:  5'- cGGCGAGGACGAGGCCGUCUACUGCUUc -3'
miRNA:   3'- -CCGCUCCUGCUCCGGCAGAUGACGAA- -5'
8953 5' -57.7 NC_002512.2 + 183509 0.8 0.225589
Target:  5'- cGCGAGGGgGAGGCCGUCcucgccugGCUGCg- -3'
miRNA:   3'- cCGCUCCUgCUCCGGCAGa-------UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 73911 0.77 0.347107
Target:  5'- cGCGGGGACGuacAGGCCGU--GCUGCUUc -3'
miRNA:   3'- cCGCUCCUGC---UCCGGCAgaUGACGAA- -5'
8953 5' -57.7 NC_002512.2 + 189911 0.76 0.410677
Target:  5'- cGGCGAGGACGGcGGCUccgGUCUcggcggcgACUGCUc -3'
miRNA:   3'- -CCGCUCCUGCU-CCGG---CAGA--------UGACGAa -5'
8953 5' -57.7 NC_002512.2 + 228669 0.73 0.53735
Target:  5'- cGGgGAGGACGGGGCCGgg-GCcGCc- -3'
miRNA:   3'- -CCgCUCCUGCUCCGGCagaUGaCGaa -5'
8953 5' -57.7 NC_002512.2 + 110282 0.73 0.546978
Target:  5'- aGGCGAGcGGCGAGGgCGaC-ACUGCUg -3'
miRNA:   3'- -CCGCUC-CUGCUCCgGCaGaUGACGAa -5'
8953 5' -57.7 NC_002512.2 + 207523 0.73 0.556659
Target:  5'- -aCGAGGACGGGGCCGcgucCUcccGCUGCg- -3'
miRNA:   3'- ccGCUCCUGCUCCGGCa---GA---UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 200842 0.73 0.56639
Target:  5'- aGCGGGGGCGcGGCgCGUCU-CUGCc- -3'
miRNA:   3'- cCGCUCCUGCuCCG-GCAGAuGACGaa -5'
8953 5' -57.7 NC_002512.2 + 156835 0.72 0.576163
Target:  5'- uGCGAGGccuGCgGGGGCCG-CUGCUGCc- -3'
miRNA:   3'- cCGCUCC---UG-CUCCGGCaGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 116596 0.72 0.595815
Target:  5'- gGGCGAGGGCggGAGGcCCGcCgcgGCUGCc- -3'
miRNA:   3'- -CCGCUCCUG--CUCC-GGCaGa--UGACGaa -5'
8953 5' -57.7 NC_002512.2 + 215150 0.72 0.595815
Target:  5'- gGGgGAGGcgACGAgcaccuGGCCGUCcUGCUGCUc -3'
miRNA:   3'- -CCgCUCC--UGCU------CCGGCAG-AUGACGAa -5'
8953 5' -57.7 NC_002512.2 + 215215 0.72 0.605682
Target:  5'- cGGCG-GGGCGGacaacGCCGUCUAcCUGCUc -3'
miRNA:   3'- -CCGCuCCUGCUc----CGGCAGAU-GACGAa -5'
8953 5' -57.7 NC_002512.2 + 103176 0.72 0.605682
Target:  5'- cGGCGAGGACGAGGaCCugaGcCUGCccgGCg- -3'
miRNA:   3'- -CCGCUCCUGCUCC-GG---CaGAUGa--CGaa -5'
8953 5' -57.7 NC_002512.2 + 220546 0.72 0.615568
Target:  5'- cGCGAGGGCGucacGCCGUCUACcugGCc- -3'
miRNA:   3'- cCGCUCCUGCuc--CGGCAGAUGa--CGaa -5'
8953 5' -57.7 NC_002512.2 + 9547 0.71 0.635366
Target:  5'- cGGCGuuGACGAGGCCGUCcg--GCc- -3'
miRNA:   3'- -CCGCucCUGCUCCGGCAGaugaCGaa -5'
8953 5' -57.7 NC_002512.2 + 118197 0.71 0.645265
Target:  5'- cGCGAcccCGAGGCCGUCUGgUGCg- -3'
miRNA:   3'- cCGCUccuGCUCCGGCAGAUgACGaa -5'
8953 5' -57.7 NC_002512.2 + 201683 0.71 0.655155
Target:  5'- cGGCGAGGGC--GGCCGcgUCUGgUGCg- -3'
miRNA:   3'- -CCGCUCCUGcuCCGGC--AGAUgACGaa -5'
8953 5' -57.7 NC_002512.2 + 109029 0.71 0.655155
Target:  5'- gGGCGGGGACGAGGaCCGggggg-GCUc -3'
miRNA:   3'- -CCGCUCCUGCUCC-GGCagaugaCGAa -5'
8953 5' -57.7 NC_002512.2 + 124204 0.71 0.665028
Target:  5'- gGGacaGAGGcaccGCGAGuaccgcGCCGUCUGCUGCg- -3'
miRNA:   3'- -CCg--CUCC----UGCUC------CGGCAGAUGACGaa -5'
8953 5' -57.7 NC_002512.2 + 2299 0.71 0.674875
Target:  5'- uGCGGGuGGCGGGGC--UCUGCUGCg- -3'
miRNA:   3'- cCGCUC-CUGCUCCGgcAGAUGACGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.